Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2001 ATGACGGAATACTGGGTGAGCCAGGGGAACAAATGGTGTGACTTTTGTAAAATTTATATATCGAACAATCCTTCGAGCATTAGAAATCATGAGCTTGGTCAACGCCACAAAGACAATGTCGCCAAGAGGCTAGCTGTTATGCAAAAGGAGAATGCTGCTAAGGAGAAAGAGCAGAAGGAAACAGCTCACGCCCTTGAGCAAATTGAAGCGAAAGCACAGCGCAGCTATCAAAAGGATAAAGCAAAGTTTGGGGAAACCAGAGAATCTCATGAATTGGATGACCAAGAATGGCAGTTTGATGACAGTCCAGGTTACTACTACGATAAAACAAATGGATTTTGCAATGATCCAAAATCAGGGTTTTACTATTCTGATGCTATAGGGAAGTGGGTGACTCAAGAAGAAGCATATGCCTCACCTCAGTTTTCGTCAAATGCTAGGATAAGTGGACCAAATTCAAACTCTTTGTCAACTTCACAATCAAAATCAGTTGAAAAGAAAACTGAAAATAAATCTCAAAATGAACTTTCACCGGGGCAAGTTGTTAGTTCTTCTTTGAATCCCAGAAAAAATGTGAAAGATGCCTATTCATCTCTTACTGTCGGCAAGAGAAAGAGAGCTGAAGAGAAGTCCAAAGCCAAAGTTATCTCTGAAGAAGAGAAAGCAGCTCTTAAGGCAAGAGAAGCTGAAAAGAGTAGAAGAGAGGGAGAAATCCTTGTTTGGTTTATACAGTAA 735 0.4014 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGQRHKDNVAKRLAVMQKENAAKEKEQKETAHALEQIEAKAQRSYQKDKAKFGETRESHELDDQEWQFDDSPGYYYDKTNGFCNDPKSGFYYSDAIGKWVTQEEAYASPQFSSNARISGPNSNSLSTSQSKSVEKKTENKSQNELSPGQVVSSSLNPRKNVKDAYSSLTVGKRKRAEEKSKAKVISEEEKAALKAREAEKSRREGEILVWFIQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2001 244 Gene3D Classic Zinc Finger 9 83 - -
Amo20g2001 244 PANTHER WW DOMAIN BINDING PROTEIN 4 1 228 IPR040023 GO:0000398
Amo20g2001 244 MobiDBLite consensus disorder prediction 143 163 - -
Amo20g2001 244 ProSiteProfiles Zinc finger matrin-type profile. 11 42 IPR000690 GO:0003676|GO:0005634|GO:0008270
Amo20g2001 244 SUPERFAMILY beta-beta-alpha zinc fingers 12 52 IPR036236 -
Amo20g2001 244 SMART ZnF_U1_5 8 43 IPR003604 GO:0003676|GO:0008270
Amo20g2001 244 Coils Coil 37 71 - -
Amo20g2001 244 MobiDBLite consensus disorder prediction 143 219 - -
Amo20g2001 244 Pfam U1 zinc finger 11 43 IPR013085 GO:0008270
Amo20g2001 244 Pfam OCRE domain 93 143 IPR041591 -
Amo20g2001 244 MobiDBLite consensus disorder prediction 173 194 - -
Amo20g2001 244 MobiDBLite consensus disorder prediction 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2001 Amo-Chr20 79037023 79040044 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2001 K13220 - gmx:100804274 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2001 20 79037023 79040044 Amo20g2001 20 79037023 79040044 ECH