Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1428 ATGGTTCATTCAACTTCCACTTCCACTTCTCTTCTTCATAACAATAACCGTTTCCTCTTTTCCTTCAATTCGTCTTCCATAACCTCAAATTCAAATTCATACTCTCACTCTCACTCTAATTCTCTCTCTTTTACTAAGTTTCTCTCTTCTTCTTCTAATTCTTCTTTTTCTTCTTCGTCGTCGCCATTATGTTGCCGCGTCGCCCGGGTTTCTACCGAGCACTTGGAACTCTCTCCGCCACCGCCGGGTTTCAACTTCCGCCGAGAAATCGCCAGGCTCTCCGCCCTCCGCGATAGCCTCGCCGCCTGCGCCACTCTCCACGACAAGCTCCGACTTCTCGACACCGACTCCAGAGTCCGCCGTTTCTTCCGTTCCGGCCGGAGTAGGGTTTTGGAGTCGCTCCGGATGTCCTCCGGCGAGTTGTTTCTGCTCAAGTGCCTCGTCGCCGCCGGGCAGGAGCACGTGCTTTGCTCCGGCGTGGACGGAGTGGAGGCCGCCACTTCGGCCACCGCGAACACGAGCTCCTCCGTGAAGAGCGCGCTTTATGCGCTAGCGGAGATTATAGAGAGCTTGGACTCCCATGGAAGCAATGGCGGCAGTGCCAGTTTCGGGAGGAGCACAACGGTGACTTTGGACGATGAAGAAATTAGGAACTTGGAATCTTTGTTGGAGAGTTTAGGGGAGATTGAAAGATTCTATGATTGCATTGGAGGAATTATAGGATACCAGATAAAGACGTTGGAGCTTCTTGTTGAAAAATTACATGACAGGCAGAATGTAAGTTGGTCTCAGCACATGCATGAAATGCAAGAATGCCGGGTTTGTGGAATCGATGCACCAAAGGGGGTTGACCTCACTGAAAATACGGATTATGCATCTCAGGCAGCTCTATGGGGTATAGAGGGTTTGCCAGACCTAGGCGAAATTTATCCTTTGGGAGGCTCTGCGGACAGGCTTGGTTTAGTCGATTCTAACACCGGTGAATGCCTTCCTGCCGCAATGTTACCGTTTTGTGGAAGGACTTTGCTGGAAGGTCTTGTAAGAGATCTTCAGGCAAGAGAATTCTTGTACTTCAAGTTATATGGGAAACAATGTATCACTCCTGTTGCAATAATGACAAGTTCTGCAAAGAACAACCATGAACATGTCACATCTCTGTGCGAAAGACTTTCATGGTTTGGAAGAGGTCGATCAACTTTCCAATTTTTTGAACAGCCTCTTGTTCCGGTTGTTGGTGCAGAAGATGGGCAGTGGTTGGCCACCAAACCTTTCATTCCGTTGAGCAAGCCTGGTGGTCATGGTGTCATATGGAAACTTGCTCATGACAAAGGCATCTTCAAATGGTTTTGTTGTCATGGAAGAAAAGGTGCAACACTGCGCCAAGTCAGTAATGTTGTGGCAGCTACAGATTTAACTCTCCTAGCCTTAGCTGGCATTGGTTTACGTCAAGGAAAGAGAATGGGGTTCGCATCTTGTAAGCGGAACTCAGGTGCCACAGAAGGAATTAATGTGCTGATGGAAAAGAAAAATCTTGATGGAAACTGGGAATATGTTGTGTCATGCATTGAATACACTGAGTTTGACAAGTTTGGAATTACTGATGGACCTTGCACTCCAAACTGTTTGCAGGCAGATTTCCCAGCCAATACAAACATCTTGTATGTTGATTTACCTTCTGCCGAGCTAGTTGGATCAAGTAAGAATGAAAATTGCTTACCAGGAATGGTGCTAAATACAAAAAAGCCCATAGTATATGCAGATCAGTTCGGAAGACACCGTAGTGTCTTAGGTGGTAGACTAGAGTGCACAATGCAAAATATAGCAGACAATTTTTCCAATGTATACTCGTCTAGGTGTTACAATGGTGTAGAAGATAAGCTAGACACATTTATCGTATACAATGAAAGGAGAAGAGTTACTTCATCTGCCAAGAAAAAGAGACGACAAGGAGACAAGTCTTTACACCAGACACCTGACGGAGCTCTTTTAGATATCTTGCGAAATGCCCATGATCTTCTTTCACAATGCGATATAAGACTTCCTGAGATTGAAGCTAATGAGAATTATGTCAATTCGGAACCACCACTTCTCATCCTTCTACATCCTGCACTTGGTCCTCTTTGGGAAATCACTAGACAAAAGTTTTATGGCGGTTCCATAGCCGAGGGCTCAGAGCTACAAATTGAGGTTGCAGAGTTCTTTTGGAAGAATGTTCAGCTCAATGGAAGCCTAATAGTAATAGCTGAAAATGCAATGGGCTCAATGAAGATCAATGAGAATGGTGAATCCATACTACATTACGGGCAAAGGTGTGGAAAATGTAAATTGGAGAATGTTAAGGTATTGAACAAGGGAATTGATTGGACTTGTGGTGAAAACATATACTGGAAACATGATGTACAGCGGTCTGAAGTACTTAAGATAGTACTGCACGGAAATGCTGAATTTGAGGCTACCGATGTTGTCTTACAGGGAAATCATGTATATGAAGTTCCAGATGGCTACAAGCTGAAGATCACGCAAGGAAACACAGGTTTAGCAATTCAGTTAGATCCGATTGAAGAGAGTAGGATGGAGAGTGGAAGCTGGCACTGGGACTACAAGATAGAAGGTTCTCATGTTTGCCTAGAATTAGTAGAATCATAG 2646 0.4501 MVHSTSTSTSLLHNNNRFLFSFNSSSITSNSNSYSHSHSNSLSFTKFLSSSSNSSFSSSSSPLCCRVARVSTEHLELSPPPPGFNFRREIARLSALRDSLAACATLHDKLRLLDTDSRVRRFFRSGRSRVLESLRMSSGELFLLKCLVAAGQEHVLCSGVDGVEAATSATANTSSSVKSALYALAEIIESLDSHGSNGGSASFGRSTTVTLDDEEIRNLESLLESLGEIERFYDCIGGIIGYQIKTLELLVEKLHDRQNVSWSQHMHEMQECRVCGIDAPKGVDLTENTDYASQAALWGIEGLPDLGEIYPLGGSADRLGLVDSNTGECLPAAMLPFCGRTLLEGLVRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHEHVTSLCERLSWFGRGRSTFQFFEQPLVPVVGAEDGQWLATKPFIPLSKPGGHGVIWKLAHDKGIFKWFCCHGRKGATLRQVSNVVAATDLTLLALAGIGLRQGKRMGFASCKRNSGATEGINVLMEKKNLDGNWEYVVSCIEYTEFDKFGITDGPCTPNCLQADFPANTNILYVDLPSAELVGSSKNENCLPGMVLNTKKPIVYADQFGRHRSVLGGRLECTMQNIADNFSNVYSSRCYNGVEDKLDTFIVYNERRRVTSSAKKKRRQGDKSLHQTPDGALLDILRNAHDLLSQCDIRLPEIEANENYVNSEPPLLILLHPALGPLWEITRQKFYGGSIAEGSELQIEVAEFFWKNVQLNGSLIVIAENAMGSMKINENGESILHYGQRCGKCKLENVKVLNKGIDWTCGENIYWKHDVQRSEVLKIVLHGNAEFEATDVVLQGNHVYEVPDGYKLKITQGNTGLAIQLDPIEESRMESGSWHWDYKIEGSHVCLELVES* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1428 881 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 206 667 IPR029044 -
Amo20g1428 881 PANTHER UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 3, CHLOROPLASTIC 19 875 - -
Amo20g1428 881 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 19 875 IPR039741 -
Amo20g1428 881 SUPERFAMILY Nucleotide-diphospho-sugar transferases 142 751 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1428 Amo-Chr20 31868706 31876984 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1428 K22920 - gmx:100804343 1332.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1428 20 31868706 31876984 Amo10g0940 10 15698961 15706797 hybridization