Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1420 ATGGAAACCACCGAACAGCCAAACCCTAACAACCACCCCTCCCCCAATGCCGACCCCGAACAACAACAAAGCCACTTCACCGACGGAGACGACGACGAAGAAGAATTTGAAGAAGAAGAAGAGGAAGAAGACGGAGACGACGTCGTTTCGCGTGACTCCCAGTCCCCAGTGTCGCAGCTTCGCGAGCAGCGCTTCAAGATGGAGACGCTCTCGCGGCGGCTGTCATCGGAGCTTGTACCAATCAGAGTCCACGACATTGTGATCCGTGGCAACGCGAAGACGAAGGATTGGGTGATCCAAGCGGAGCTCGAGGGGATCGAGAACGCCGCCACCGTGCAGGACCTGATTCGCGCCTCGCAGGTCGCACTTGCAAGGCTCCAGGGGCTCGGAATCTTCGATTCCACCAACCTCCGCCTTGAGCCTGGGCCGCCGGAGCTCCCTCACACAGCCAACATCGTCGTTGATGTCGTCGAAGCCGCCAGCAAAGTCAGTGGAGAATTCGGCGTTTACACCAAACCCTCGACTAGTTCCTGGACTAGTGAAGGTACTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCTTCTGTGGCCTACGGTGCTAACCAAACAACGGAGGTGAGTATAGGGGTCTATGCCCCTAGACTTAAAGGATTGTTAACTCCTCTTGTAGCACGACTATCCTTGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAATTGTTGGGCATGTCTCTTGGCTTAATATCAACACGGCACCATGACTTAGTGTACACTCTTGGATGGCGTACCTTAACAGATCCGTCACAAATGTCATCCAGGTCTATAAGGAGACAACTTGGCCATGGTTTGCTGTCATCTCTGAAGTATACATTTAAATTTGACAGGAGAAATTCACCAATCAGGCCTACCAGAGGATATGCTTTTCTTTCTACCACTCACTTTGGTGGCCTCACACCAGATGAACGAAGCTTGCGGTATATTCGTCAGGAGTTCGATGTTCGTTGCGCAGTCCCCTTTGGGTTTTATAATACAGCACTGAATCTTGGCATTTCTGCCGGTGCTGTTTTTCCATGGGGCCCTGGTTTCTTGAACAAGCCATCTCCCCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTTGGAGGGCCAGTAACATTGTGGGGATTCAAAACTCGGGGATTAGGTCCTACTGAACCAAGAAGGCAAAGCAGAGATGGAGTCAGCAATGACAATGATGATTCATCTAGATGGGACTTTGTTGGAGGGGATCTTGCTGTTAGTGCTTTTGCAGACCTATCTTTTGATCTTCCAATCAAGTGGTTGAGAGAACACGGAATCCATGGTCATGTGTTTGCTGGTGCTGGGAATATTACAAAATTAACTCAGAACGAATATAAGCTGTTCTCTCCTCGCAAGTTCTTAGAATCCTTTCGGACATCAGTGGGCTGTGGATTTGTTATTCCTACTAGACTTTTCCGCTTAGAGGGTAACTTCTACCATATTCTCCGGCAGGATGAGCATGATCGTGGAAAAACTGGATTTAGATTCAGTTTTTCGTCTCCTTCGTAG 1605 0.4891 METTEQPNPNNHPSPNADPEQQQSHFTDGDDDEEEFEEEEEEEDGDDVVSRDSQSPVSQLREQRFKMETLSRRLSSELVPIRVHDIVIRGNAKTKDWVIQAELEGIENAATVQDLIRASQVALARLQGLGIFDSTNLRLEPGPPELPHTANIVVDVVEAASKVSGEFGVYTKPSTSSWTSEGTLKYKNLLGYGDLWDASVAYGANQTTEVSIGVYAPRLKGLLTPLVARLSLLSQDWQEFSSYKEQLLGMSLGLISTRHHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKFDRRNSPIRPTRGYAFLSTTHFGGLTPDERSLRYIRQEFDVRCAVPFGFYNTALNLGISAGAVFPWGPGFLNKPSPLPERFYLGGDFSPVCTLGGPVTLWGFKTRGLGPTEPRRQSRDGVSNDNDDSSRWDFVGGDLAVSAFADLSFDLPIKWLREHGIHGHVFAGAGNITKLTQNEYKLFSPRKFLESFRTSVGCGFVIPTRLFRLEGNFYHILRQDEHDRGKTGFRFSFSSPS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1420 534 Pfam Surface antigen variable number repeat 81 158 IPR010827 GO:0019867
Amo20g1420 534 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 171 532 - -
Amo20g1420 534 Pfam Omp85 superfamily domain 188 531 IPR000184 GO:0019867
Amo20g1420 534 Gene3D membrane protein fhac 80 159 - -
Amo20g1420 534 MobiDBLite consensus disorder prediction 27 48 - -
Amo20g1420 534 MobiDBLite consensus disorder prediction 1 23 - -
Amo20g1420 534 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 8 532 - -
Amo20g1420 534 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 8 532 IPR039910 -
Amo20g1420 534 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1420 Amo-Chr20 31764791 31770918 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1420 K07277 - gmx:100785408 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1420 20 31764791 31770918 Amo20g1420 20 31764791 31770918 ECH
Amo20g1420 20 31764791 31770918 Amo10g0942 10 15826137 15832658 hybridization