Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1417 ATGTCTCACGAAGGAATGCTTTCTTCGATAATAAATGAAGCCAGCAACTACACTGGAAAAGACCCGCTTCTTCCATGGCTCCGGGGTATCCGAAAAATGAAGGACAGTTTTGCCCCTGAAGCCCTCAAGGAAAAGCTACCAGTGTTGTTGCAGAAATGCGCACAAAAGTTCCAGCTCGATCGCCGTTACAGAAACGACATGCGCTACCTTCGCGTTTGGCTTCACTTGATGGACTTTGTGGATGATCCTGGAGAACTTTTGAGAACAATGGAAGCTAATCATATTGGAACAAAGCGCTGTCAATTCTACCAAGCATATGCACTTTTCTATGAGAAAAGCAAGAAGTATGATGAGGCTGAGAGGATGTACCATCTTGGAGTGAAGAACCTTGCAGAGCCTATGGATGAGTTGCAGAAATCATATGATCAATTCCTTCAGCGCATGGAACGTAGGAATAACAAGAGAAACAATAAGCAGGAAGTGAGAGGTGCCAGAAGACCTCTGGCTGCAAAAGGCAACCCTTCTGTTGCGAATAATATTGAGGGAAGCAGTGGAGCATGCAGTGTTGAGGGTGTGCAAAAGGGACCCCAAGTTGTGAGTTCTGAAGCTGATGATGCCAATGATAGAAATGTAAAGAATAGAAAAGATGAATGCAAGAGGGTTTTGGGGGAGAACACAGTAGTTGTATCTAAATTTGTTGACACTGCCATTGTTGGGAAATCAGAAGCAGAAGATGCATGCCATCATGGACTGGTGGATCCCACAATAAATATGAAGGAGGCCATGAATGCCATTAACAGCATGTTCCGGGCACCATTAGAGACAGTCCCAGTACCCCGGAAATCACAGAGAAACCAGTTGAAGGAAGATCGTAGTATGAAGAATGGGTTTGAAGTATTTGTTGACGAAAACTTGGATAATGGAATGAAACCAACTGGTTCTTCGCAGAAGAGAACTGAAGCCAGCCAACCTCCCCAAGAACTACTTAAGATATATATTGATGATGAAGGATTCTCTGAGACCAGTGATGTAAATGCGAATTCACATGAAGATTCTACTTCATCAGCTTCACAACCGAATGGTTTGGTTTTCCCCCATCCCAAGGATCTTCCTTCTGAAAAATCTAGTGATAGAGACGAAGAAAGTTCCCATAAATCAAAGTTTAGAGAGGATACAGTTGTGTGCAGATTTGTTGGCTCTGCAATCTTGGATGAGCCAGAGGTGGAGAATGTTTGCCACCATGGTTTGGTGGACCCAACAATCAACATGAAGGAAGCCATGAATGACATAAATAACATGTTTGGAAAGCCAATGGATTTTGTTAGGAAAAAAAGATCAATGAAACTGGAGAAAGCTCCTGAGATCAACAGGGGAAAGGAACTTGATGGCTTTTCAATCCTTGCTGATGATGATATGGAGCAGCAACAAGTTGCGCCACCACCAAAATTTTCGCGAAAGTCAAAGGAATGCGAGTTATATGAGCCAACTATCCACACAAAGGAAGCGATGGACAACATAAACAAGATGTTTAATATGCCATTGGATTTTTAA 1551 0.4281 MSHEGMLSSIINEASNYTGKDPLLPWLRGIRKMKDSFAPEALKEKLPVLLQKCAQKFQLDRRYRNDMRYLRVWLHLMDFVDDPGELLRTMEANHIGTKRCQFYQAYALFYEKSKKYDEAERMYHLGVKNLAEPMDELQKSYDQFLQRMERRNNKRNNKQEVRGARRPLAAKGNPSVANNIEGSSGACSVEGVQKGPQVVSSEADDANDRNVKNRKDECKRVLGENTVVVSKFVDTAIVGKSEAEDACHHGLVDPTINMKEAMNAINSMFRAPLETVPVPRKSQRNQLKEDRSMKNGFEVFVDENLDNGMKPTGSSQKRTEASQPPQELLKIYIDDEGFSETSDVNANSHEDSTSSASQPNGLVFPHPKDLPSEKSSDRDEESSHKSKFREDTVVCRFVGSAILDEPEVENVCHHGLVDPTINMKEAMNDINNMFGKPMDFVRKKRSMKLEKAPEINRGKELDGFSILADDDMEQQQVAPPPKFSRKSKECELYEPTIHTKEAMDNINKMFNMPLDF* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1417 516 ProSiteProfiles BUB1 N-terminal domain profile. 10 166 IPR013212 -
Amo20g1417 516 MobiDBLite consensus disorder prediction 299 326 - -
Amo20g1417 516 SMART mad3_bub1_i 3 127 IPR013212 -
Amo20g1417 516 MobiDBLite consensus disorder prediction 370 386 - -
Amo20g1417 516 MobiDBLite consensus disorder prediction 150 165 - -
Amo20g1417 516 Coils Coil 134 154 - -
Amo20g1417 516 PANTHER OS11G0128700 PROTEIN 3 516 - -
Amo20g1417 516 MobiDBLite consensus disorder prediction 308 323 - -
Amo20g1417 516 MobiDBLite consensus disorder prediction 150 188 - -
Amo20g1417 516 MobiDBLite consensus disorder prediction 340 386 - -
Amo20g1417 516 Gene3D - 8 164 - -
Amo20g1417 516 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 3 516 IPR015661 GO:0007094
Amo20g1417 516 Pfam Mad3/BUB1 homology region 1 12 127 IPR013212 -
Amo20g1417 516 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1417 Amo-Chr20 31705120 31707626 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1417 - - gmx:100806627 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1417 20 31705120 31707626 Amo20g1417 20 31705120 31707626 ECH
Amo20g1417 20 31705120 31707626 Amo10g0945 10 15914019 15917190 hybridization