Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1147 ATGTCTTCACTTCAACTGTTGCAACTAACTAAGCATGGCCAGAATTTTCTGGCTTCAAGGAGGAAAACGTTACTGTTTGCAACTGGTATCTTTGTTGCTGGTGGAACAGCTGCATATATGCAATCAAGGTCAAGGTTTAATAGACGTGATTTAGGTCATTGTAACGGGCACAATGATGATAACCAAGTCACAACAGAGGAGGTTGTGAAGGGTTCTACAGCATCAAAAAATAAACAAAAGAAAGGGGGGTTGAAGTCTCTTCAAGTCCTTGCTGCAATTCTTCTATCTGAGATGGGAAAATTAGGTGCAAGGGACCTTTTAGCTTTAGTTGGCGTAGTGGTGTTTCGAACTGCTTTGAGCAACAGGCTAGCAAAAGTGCAAGGCTTCCTATTTCGTGCTGCATTTCTTCGACGAGTGCCATTGTTTTTTCAGCTTATTTCAGAAAATATTCTTTTGTGCTTCCTCTTATCGACCATGCATTCTACATCAAAGTACATAACAGGGACTTTGAGCCTGCATTTCAGAAAAATATTGACGAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTACTACAAAATATCACATGTAGATGGTCGGATAAATAACCCAGAGCAAAGAATTGCCAGCGATGTGCCAAGGTTCTGTTCAGAATTGAGTGAAATTGTACAGGATGATCTAACTGCAGTTGCTGATGGACTTCTATACACATGGAGACTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTAYGTACTTGGAGCTGGTGCTGCAATCAGAAACTTCTCCCCTTCATTTGGGAAACTTATGTCTAAAGAGCAGCAATTGGAGGGAGAATATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTATGGGGGAGAGAAGAGGGAAGAATCTCATATTCAACAGAAGTTTAAGAACTTGGTTAGACACATGAATGTTGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTTTTGTTGAAGTACCTTGGTGCTACTGTTGCCGTTATATTGATCATAGAACCTTTCTTTTCTGGTCATCTAAGGCCTGACAGTTCAACTCTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCATACAAGTGTCATAATTTCTCTGTTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTTAATCGTCTCAGTGGGTATGCTGATCGCATTTATGAGTTGATGGCTGTATCAAGGGACCTAAGCATGGTTGATGAGAAATCTTCACTGCAAAGAAAAGGAAGCAAAAATTTCTTAAGTGAAGCTAACTATATTGAATTTTCTGGTGTCAAGGTTGTCACCCCCACTGGTAATGTCTTGGTGGATGATCTGACCCTTAGGGTTGAGTCAGGATCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCCGTGTTCTAGGCGGTCTTTGGCCGTTGATATCTGGACATATTGTAAAACCAGGCATTGGTGCTGATCTCAACAAGGAGATATTCTATGTGCCACAAAGGCCGTACACTGCTGTGGGAACACTTCGTGATCAATTAATTTATCCTCTCACTGCAGATCAAGAGGTTGAACCACTCACAGAAAGTGGTATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCACCTGAAAAAGAGGTAAACTGGGGCGACGAACTTTCATTGGGTGAACAGCAGAGATTGGGCATGGCTAGACTTTTCTACCATAAGCCAAAATTTGCAATTCTTGATGAGTGCACTAGTGCTGTCACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTACGGGCAATGGGAACATCATGCATTACCATATCACATCGTCCRGCTTTAGTTGCATTCCAYGATGTGGTTTTGTCATTGGATGGTGAGGGAGGGTGGAGTGTTCATTACAAAAGGGAGGACTCTTCGACTGAAGTGGGGGTCAATACAATGAAGGCATCTGAGACAAAACGACGGAGTGATGCAAAAGCAGTTCAACGTGCATTTTCCATGAGCAAGAAGGATTATGCATTCTCAAATTCAAAGGCTCAGTCATATATTGCAAAAGTGATAGCATCATCTCCGTCTAAAAATAATGCTGTTTCRCCCTCTGCTGTGCCCCAACTTCGTGGTAATACAAGGGTATTACCATTGAGGATAGCTGCAATGTGCAAAGTATTGGTACCCACCGTGTTTGATAAACAAGGTGCACAACTGCTTGCTGTAGCTTTTCTTGTTGTTTCAAGAACATGGGTTTCGGACCGTATTGCATCGTTGAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTGCCTTTATTCGGTTGATTGGTTTAAGTGTTCTACAAAGTGCTGCATCATCTTTCATTGCACCTTCTATAAGACACTTGACAGCTAGGCTAGCTCTTGGGTGGCGGATTCGTTTGACACAGCATCTACTCAAGAACTACTTGAGAAACAATGCATTCTACAAGGTCTTCCACATGGCAAGCAAAAACATTGACGCAGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCTGGACTGGTCACTGGATTGGTAAAACCATCTGTGGATATCTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAGAGGGGAGTTGCAATACTCTATGCTTATATGTTACTTGGTCTAGGATTTCTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTCAGGTTCATGCATGAAAGACTMTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCCCGAGAAAAGGCTATGGTTGAATCAAGGTTCAAAGAGCTTCTCACCCACTCCAAGTACCTTCTAAAAAAGAAGTGGTTGTTTGGTATACTGGATGATTTTATCACCAAGCAACTCCCTCATAATGTCACTTGGTTGCTGAGCTTGTTGTATGCCATGGAACATAAGGGAGACCGTGCATCAATAAATACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTCGGTGACATCCTTGAACTGAATAGAAAGTTTGTAGAGCTCTCTGGTGGTATTAATCGGATTTTTGAGCTTGAAGAACTATTGGAGGCAGCACAGTCTGGGAATATGATTGATGCTGATACGTMTCCAGTTAGAGATTCTCATTCTAAAGATGTTATTTCCTTTTCAAAAGTTGATATTGTCACYCCTACTCAAAAGATGTTGGCCAGAGAGTTGACATGTGACATTGCGCTTGGCGGAAGTCTGCTCGTTACTGGTCCAAATGGTAGTGGGAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAAGACTATCTAGACCATCTGAAGGTGAGGATCAAGAGGCTGGAKCAGGTTGTGGCATTTTCTATGTTCCTCAGCGTCCCTATACTTGCCTGGGAACCCTGCGTGATCAAATTATATATCCCCTGTCCCGTGAGGAAGCAGAAATTAAAGCATTGAAGATCTACGGAAAAGGTAATAGTCAACTTGCCAGACATGTGTTGGATTCACACTTACAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAGAGGGAGAAGAGTGGCTGGGATGCAACTTTAAACTGGGAAGATATTCTTTCTCTCGGAGAACAACAGAGGCTAGGCATGGCACGGTTGTTCTTCCATAAGCCTAAATTCGGCATCCTTGACGAGTGCACCAATGCCACTAGTGTTGATGTTGAAGAACACTTATATGGGCTTGCAAAGGAGATGGGAATCACATTTGTTACTTCTTCGCAACGTCCTGCATTAATACCCTTCCATTCCTTGGAACTACGACTGATTGATGGCGAGGGCAACTGGGAGCTTCGTTTGATCAAGCAATGA 4005 0.4222 MSSLQLLQLTKHGQNFLASRRKTLLFATGIFVAGGTAAYMQSRSRFNRRDLGHCNGHNDDNQVTTEEVVKGSTASKNKQKKGGLKSLQVLAAILLSEMGKLGARDLLALVGVVVFRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRINNPEQRIASDVPRFCSELSEIVQDDLTAVADGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGEKREESHIQQKFKNLVRHMNVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRDLSMVDEKSSLQRKGSKNFLSEANYIEFSGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGADLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEPLTESGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREDSSTEVGVNTMKASETKRRSDAKAVQRAFSMSKKDYAFSNSKAQSYIAKVIASSPSKNNAVSPSAVPQLRGNTRVLPLRIAAMCKVLVPTVFDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKAAFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFHMASKNIDADQRITHDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFKELLTHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASINTQGELAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFELEELLEAAQSGNMIDADTXPVRDSHSKDVISFSKVDIVTPTQKMLARELTCDIALGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEGEDQEAGXGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEIKALKIYGKGNSQLARHVLDSHLQVILENVRLNYLLEREKSGWDATLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKEMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRLIKQ* 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1147 1334 Gene3D ABC transporter type 1, transmembrane domain 104 417 IPR036640 GO:0005524|GO:0016021
Amo20g1147 1334 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 446 677 IPR003439 GO:0005524
Amo20g1147 1334 Pfam ABC transporter 463 608 IPR003439 GO:0005524
Amo20g1147 1334 CDD ABCD_peroxisomal_ALDP 1097 1327 - -
Amo20g1147 1334 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 591 1334 - -
Amo20g1147 1334 SUPERFAMILY ABC transporter transmembrane region 142 416 IPR036640 GO:0005524|GO:0016021
Amo20g1147 1334 Gene3D - 1084 1321 IPR027417 -
Amo20g1147 1334 Pfam ABC transporter transmembrane region 2 90 358 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g1147 1334 Pfam ABC transporter transmembrane region 2 745 1010 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g1147 1334 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 591 1334 - -
Amo20g1147 1334 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 78 596 - -
Amo20g1147 1334 Pfam ABC transporter 1115 1280 IPR003439 GO:0005524
Amo20g1147 1334 ProSitePatterns ABC transporters family signature. 1252 1266 IPR017871 GO:0005524
Amo20g1147 1334 SMART AAA_5 471 650 IPR003593 -
Amo20g1147 1334 SMART AAA_5 1122 1322 IPR003593 -
Amo20g1147 1334 ProSitePatterns ABC transporters family signature. 580 594 IPR017871 GO:0005524
Amo20g1147 1334 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1097 1332 IPR003439 GO:0005524
Amo20g1147 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1092 1323 IPR027417 -
Amo20g1147 1334 Gene3D - 432 709 IPR027417 -
Amo20g1147 1334 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 150 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g1147 1334 CDD ABCD_peroxisomal_ALDP 446 654 - -
Amo20g1147 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 650 IPR027417 -
Amo20g1147 1334 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 78 596 - -
Amo20g1147 1334 SUPERFAMILY ABC transporter transmembrane region 760 1068 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1147 Amo-Chr20 21885488 21897901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1147 1 1334 Acyl Lipid Metabolism Gene Families AT4G39850 77.885 0.0 2147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1147 K25819 - gmx:100813765 2368.96