Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1088 ATGACATCTTGGGTGTTTGAGGAGAATGGACACGACGAGGGAAAACAACAACCCTCCGATTTGATCATCACGGAAAACACGAATCTGACGGCCACAAATCTCTCACTGCCAACTGAAACCTTTCTCAGAGCCGCGGTTTCACTCAAGGACCAGGTGGTGGAGGAGACGTGGAAGCGGAGGGAAATGGTTGATCCAACGGTGTATAAGGGTTTGCTGGGCACAGCTTTCACTTGCTTGAGGTCGTACGAGGTCACCGGTAACCACACGGACTTGCAATTATGTGCAGAGATTGTCGACACGTGCGCCACCGTTGCACGTGACTCCCTCAGGCACGTGACGTTTTTATGTGGAAGAGGAGGAGCATATGCGCTTGGTGCGGTTGTCGCTAATTACATGGGGGACCCTCGGAAGCGTGACCTGTTTTTGGGTCTATTCGTTGAGGTTGCAAAAGAGAGAGCCCTGCCTGTTGGACCTGAGGAAGGTGGTTTTGGAATGTCATACGATCTTCTATACGGCCGCGCCGGATTCTTATGGGCCGCGCTATTCATAAAGAAGTACCTAGGAGATGAGGCAGTTCCAAGCGATATTCTAATGCCAATTATCGATGCAATGTTGGCCGGAGGTAGGGCAGGAGCCTCCGACATTAAGGACTGTCCATTGATGTATCGATGGCATGGGACGAGGTACCTTGGCGCAGCGAACGGCCTAGCCGGAATCCTGCATGTGCTGCTCCATTTTCCGCTTCCCGGCGAGGATGCCGAAGATGTGAAGGGAGCTTTAAGGTACTTGATGAGTAAACGGTTCCCTCATAGTGGCAACTACCCGTCGAGCGAAGGGAATCCAAGGGATAAGTTGGTGCAATGGGGTCATGGCGCAACCGGCATGGCCATTACTCTGTCCAAAGCTGCAGAGGTTTTTCCAAATGACAGAGAACTCCGAGACGCGGCAATCGAAGCGGGGGAGGTAGTGTGGAAGAGTGGCCTGGTGAAGAAGGTAGGACTTGCGGACGGCGTGGCAGGAAACGCCTACGGCTTCCTTTCGCTCTTCAGACTAACCAAAGAACAGATCTACGAAGAGAGAGCAAAAGTCTTCTCATGTTTCTTGTACCGCAATGGAAGTTCTCTTATTGCGGGTGCTGATGGTGGAAATGCTTATTCCCTCTTCCAAGGTATTGCTGGAACTGCATGCCTCTGGTTTGATCTTGTTGCACCTCATAACTCTAGATTTCCGTGTTATGAATTATAG 1245 0.5133 MTSWVFEENGHDEGKQQPSDLIITENTNLTATNLSLPTETFLRAAVSLKDQVVEETWKRREMVDPTVYKGLLGTAFTCLRSYEVTGNHTDLQLCAEIVDTCATVARDSLRHVTFLCGRGGAYALGAVVANYMGDPRKRDLFLGLFVEVAKERALPVGPEEGGFGMSYDLLYGRAGFLWAALFIKKYLGDEAVPSDILMPIIDAMLAGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPGEDAEDVKGALRYLMSKRFPHSGNYPSSEGNPRDKLVQWGHGATGMAITLSKAAEVFPNDRELRDAAIEAGEVVWKSGLVKKVGLADGVAGNAYGFLSLFRLTKEQIYEERAKVFSCFLYRNGSSLIAGADGGNAYSLFQGIAGTACLWFDLVAPHNSRFPCYEL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1088 414 PANTHER LANC-LIKE PROTEIN 19 414 - -
Amo20g1088 414 CDD euk_LANCL 67 410 - -
Amo20g1088 414 SUPERFAMILY LanC-like 48 414 - -
Amo20g1088 414 Pfam Lanthionine synthetase C-like protein 62 414 IPR007822 -
Amo20g1088 414 PRINTS Eukaryotic LanC-like protein family signature 400 414 IPR020464 -
Amo20g1088 414 PRINTS Eukaryotic LanC-like protein family signature 348 366 IPR020464 -
Amo20g1088 414 PRINTS Eukaryotic LanC-like protein family signature 265 280 IPR020464 -
Amo20g1088 414 PRINTS Eukaryotic LanC-like protein family signature 197 212 IPR020464 -
Amo20g1088 414 PRINTS Eukaryotic LanC-like protein family signature 303 324 IPR020464 -
Amo20g1088 414 SMART LANC_like_2 61 414 IPR007822 -
Amo20g1088 414 PANTHER LANC-LIKE PROTEIN GCL1 19 414 - -
Amo20g1088 414 PRINTS LanC-like protein superfamily signature 167 182 IPR007822 -
Amo20g1088 414 PRINTS LanC-like protein superfamily signature 332 345 IPR007822 -
Amo20g1088 414 PRINTS LanC-like protein superfamily signature 384 401 IPR007822 -
Amo20g1088 414 PRINTS LanC-like protein superfamily signature 285 305 IPR007822 -
Amo20g1088 414 PRINTS LanC-like protein superfamily signature 229 245 IPR007822 -
Amo20g1088 414 PRINTS LanC-like protein superfamily signature 64 82 IPR007822 -
Amo20g1088 414 Gene3D - 3 414 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1088 Amo-Chr20 20050862 20061179 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1088 - - aprc:113849930 685.641