Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1072 ATGCTTGATGGAACAGAGGTGCAATTTAAGTCAGTGACATTGCAGAAGTATGTATCTGCAGATAATGGGGGAGGAATGAATGTGACTGTTGATAGGGATGTTGCATCTTCATGGGAAACCTTCAGGTTATGGAGAGTCTCTCCATCTGAATTTCAATTTCGTACCTCAAAAGGTCAGTTTCTTACATGTGATGGCGATGGCTGCACTGTCTCGGCAACAGCAAACTCTCCTTCAACATCAGAGACATACGAAATAGAGCGGAATGGGAACAGTAGAATTCATATGAAGACAAAGAATGGGGCCTATCTGCAGGCTACAACAGATGGTCAGCTTACAGCAGATTACCCGGGTTCACCAGGATGGGATGATAATGCTGCCACATTTGACATGACAATTTTGTCGAATAATTTACATGGAGATTACCAGCTAGCAAATGGATATGGACATGATCGTGCGAAAGATGTTCTTAAGAGACATAGAAATACCTTTATCACCATTGAGGATTTCAAATTTCTATATAAACACGGAATAAACACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTCGATCCTGATCCTCCGAGTCCTTTTATTGGAGGAAGTCTTGATGCTCTAGATAATGCATTTTTATGGGCACAAGAATATGATATAAAATGCATAATTGATCTTCATGCTGCTCCTGGTTCCCAAAATGGGATGGAACATAGTGCAAGCAGAGATGGATTCACCGGCTGGCCTGATTCTCCAGATAACATTCAACAGTCGTTGAATGTTATTGAATTTTTAGTTTCTAGATATGCAAGGAATCCTGCTTTGCTGGGAATTGAGCTTCTAAATGAACCGTCTGCCGGAACAGTTCCATTAGATACTTTAGTTTCTTATTACAAACAGGGCTACCAAATTGTTAGAAAACACTCTTCAACAGCTTATGTAATAATGTGCCAAAGAATTGGCATGGCAGATCCTATGGAACTTTACCAAGCCAACATAGGATCTCATAACACAGTTTTGGATTTGCATTACTACAACCTCTTCGACGCGTATTTTGTTAATATGAGCGTCGGCGATAACATACAGTACATATACAATAGCCGGGAAGGTCAACTCAAGGCCTTGAATAGTTCAAATAGCCCACTTGTTTTTATTGGAGAGTGGGTGAATGAGTGGAATGTGACGAGCGGATCGCAAAAGGATTATCAAGATTTCGGAAGGGCACAGTTAGAAGTTTACAATGCAGCTTCCTTTGGATGGTGTTACTGGACAATAAAAAATGACAGACAGCACTGGGATTTTGAGTGGAACGTTAGGAGCAACTATCTTCAGTTAGGCAAATCACCCAGCAAACAGAGATTTAACATTTTTGGATTGATAGGATTGGCATTCACCTGCTTTTGTCTCCCTTTTTTGTGA 1413 0.4076 MLDGTEVQFKSVTLQKYVSADNGGGMNVTVDRDVASSWETFRLWRVSPSEFQFRTSKGQFLTCDGDGCTVSATANSPSTSETYEIERNGNSRIHMKTKNGAYLQATTDGQLTADYPGSPGWDDNAATFDMTILSNNLHGDYQLANGYGHDRAKDVLKRHRNTFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPSPFIGGSLDALDNAFLWAQEYDIKCIIDLHAAPGSQNGMEHSASRDGFTGWPDSPDNIQQSLNVIEFLVSRYARNPALLGIELLNEPSAGTVPLDTLVSYYKQGYQIVRKHSSTAYVIMCQRIGMADPMELYQANIGSHNTVLDLHYYNLFDAYFVNMSVGDNIQYIYNSREGQLKALNSSNSPLVFIGEWVNEWNVTSGSQKDYQDFGRAQLEVYNAASFGWCYWTIKNDRQHWDFEWNVRSNYLQLGKSPSKQRFNIFGLIGLAFTCFCLPFL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1072 470 Gene3D Glycosidases 126 452 - -
Amo20g1072 470 Gene3D - 2 121 - -
Amo20g1072 470 ProSitePatterns Glycosyl hydrolases family 5 signature. 274 283 IPR018087 GO:0004553|GO:0005975
Amo20g1072 470 PANTHER FASCIN 1 449 IPR010431 GO:0007015|GO:0051015
Amo20g1072 470 Pfam Fascin domain 25 114 IPR022768 GO:0030674|GO:0051015
Amo20g1072 470 SUPERFAMILY (Trans)glycosidases 135 442 IPR017853 -
Amo20g1072 470 PANTHER - 1 449 - -
Amo20g1072 470 SUPERFAMILY Actin-crosslinking proteins 7 118 IPR008999 -
Amo20g1072 470 Pfam Cellulase (glycosyl hydrolase family 5) 164 426 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1072 Amo-Chr20 19440856 19445250 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1072 - - gmx:100809472 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1072 20 19440856 19445250 Amo10g0632 10 7479117 7483390 hybridization