Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1069 ATGACGAAACTGAGGGAGATCATTGGCATAATCAAAGACAAAGCTTCACAAAGCAAAGCAGCGATCCTCTCCAACCGCGCCAACCTCTCTCTCCTCCGCGCCACCAGCCACGACCCCTCCACCCCGCCCGCCCACCACAAGCTCTCCACCCTCCTCTCCTCCGCCGACGGACCACGTTCCTCCGCCTCCGCCGCCATCTCCATCCTCCTCCGCCGCCTCCACTCCACCCACAGCTCCGCCGTCGCCCTCAAGTGCCTCCTCGCCGCCCACCACGTCATCCGCCACGGCACCTTCATCCTCCAGGACCAGCTCTCCACGGCGTACCCGTGCTCCCGCGGCGGCAGAAACTACCTTAACCTTTCCCACTTCCGCGACCGGAGCTCCACTACGTCGTGGGAGCTCTCCTCCTGGGTGCGATGGTACGCCCACCACATAGAGAACATATTATGCGCCTCCCGAACCCTCGGATTCTTCTTCCTCTCGGCGTCGCCGCCGTCTCCTTCTTCGCCGGCGCGTGAGAACAAAGAAGAGCGGGTTTCCTGTCTCACTAACGGTGATTTGTTAAGAGAATTGGATTCTTTGGTGGCTCTTATCGAAGGGATCACGAAGAAACCCCATCACAACAACAAGATTGAAGAAGATTACAGCAAGAACAAGCTTGTGGATGAGGTTGTTGGGTTGGTGGAAGAAGACGCGGTTATGGCGGTGAGTGAGGTTTCGGCGAGGGTGAACGAGTTCAAGGAGAGAATGGGTTTGTTGAGTTTTGGTGAAGGAGTTGAGCTTGTTTGCATTTTGAAGAGGTTGGAAGAGTGCAGAGAACAACTTGTTGCGTGTTGTTCATGTCTGATGCAAAAGGGAGAGAAGAAAAGGTTCTGGGAATGTGTGAGAGAGTTGAAGGAAGTGGCTGGGAAGAACGTGTTGTGTACGGAAGAAGAGGGTAAGAGAGTTGGAAGACCAGAGAGGAAAACGGAATCGGATCGGTTTCTTGACGGAAGAGTTGTTCTGAATTCGGTTGATTTGGTGCGGTTTCCCTCTTCAAGGTTCTTCTGA 1050 0.5476 MTKLREIIGIIKDKASQSKAAILSNRANLSLLRATSHDPSTPPAHHKLSTLLSSADGPRSSASAAISILLRRLHSTHSSAVALKCLLAAHHVIRHGTFILQDQLSTAYPCSRGGRNYLNLSHFRDRSSTTSWELSSWVRWYAHHIENILCASRTLGFFFLSASPPSPSSPARENKEERVSCLTNGDLLRELDSLVALIEGITKKPHHNNKIEEDYSKNKLVDEVVGLVEEDAVMAVSEVSARVNEFKERMGLLSFGEGVELVCILKRLEECREQLVACCSCLMQKGEKKRFWECVRELKEVAGKNVLCTEEEGKRVGRPERKTESDRFLDGRVVLNSVDLVRFPSSRFF* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1069 349 Pfam ANTH domain 30 211 IPR011417 GO:0005543
Amo20g1069 349 CDD ANTH_N_AP180_plant 29 142 - -
Amo20g1069 349 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 348 - -
Amo20g1069 349 SMART enth_2 25 159 IPR013809 -
Amo20g1069 349 Gene3D - 3 159 IPR008942 -
Amo20g1069 349 SUPERFAMILY ENTH/VHS domain 29 157 IPR008942 -
Amo20g1069 349 ProSiteProfiles ENTH domain profile. 19 159 IPR013809 -
Amo20g1069 349 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 348 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1069 Amo-Chr20 19322981 19326504 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1069 - - adu:107469153 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1069 20 19322981 19326504 Amo10g0630 10 7396393 7399604 hybridization