Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1006 ATGAATCCTTTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACAGGGCGAATCCCGTAGCTACGAAATCGCCAACTCACTGCCAGCTAGGGCTCGATGCGTCGGTCAGGACGGTGAACGGCGGCTCCAAATCGAGCTCCTCTGCGCCGGATTCCTCTCATGGCGGTGGCGATTCTCTGAAGTCGTCTTCCGGCGGGAACCGCGGCGAAGAGGAGGATTTGTCAACGACGACGGCGGAGCCCCGGGAGTCGAAGGTGTTCGGTGGCGGGAACGGAGTGGCCGGAAGCGTGGCCGGAATCTTGTACAAGTGGGTGAACTACGGGAAAGGGTGGAGGTCGAGGTGGTTCGTGCTGGAYGATGGAGTGCTTTCGTACTACAAGATTCATGGTCCGGATAAGATCGTGGTGAGCCCAGCGAGGGACCGGAGCGTGAGYGTGATCGGCGAGGAGTCATCGAAGTTCGTGAAGAAGAACAATTGGAGCCTGAATCGAGTAGCAGGAGTTAGTGGTGGCAACTCTACTAAGCAATGCAAGCCCTTCGGTGAGATACACTTGAAGGTTTCTTCGGTTCGGGCTAGCAAATCTGATGATAAGCGGCTATCCATATTTACCGGGACAAAAACTCTACACTTGAGGTGTGTATCTAGAGAAGACAGAGCTATGTGGATTGAGGCCCTGCAGTCCACGAAAGATCTTTTTCCTAGAGCTCTAACAAGTAGTGATCTTGCAACTCCAGAAGATATTGTAGTTTCYACTGAGAAGCTGCGATCTCGATTGTCAGAGGAAGGRATAAGTGAGGCAGTTATTAATGACTGCGAGTCTATTATGCTCTCCGAAGTCTCTTATCTTCAAGGCAAATTGAAGTTTCTTCAGCAGAAACATGTAATGTTGCTGGACACCTTAAAACAACTAGAGACAGAGAAAATAGAGTTGGAAACRACTGTAGTGGATGAAACAAAGGAGCGTGAATCATATTGTGGACAAGGGAACAGAAGATTTAGTGATTTCTATTCTGTCATGTCGGAGGGCAGTGCTACTGATTCAGTAGCMGATAATGAAAGTCAAGACGGAGCAGATGTTGAAACTGATGATGATGATGGTGCATTTTTTGACACAAATGAGTTTTTGTGTTCAGATGCCTTAAGAAGTGCTTCTTATCGAAGTAGGGAGGGTATGACAAATGCAAGCATACATGATAGAGATTGTTTACTTTCTGATGGTTTGCATGGGTTTGAGAAGGGAATCAAAGATGTAAGCTATCCATATGTCAGAAGAAGGGATAACTTACCAGAGCCAAAAGAAAAAGAGAGGCCTGTTGGCTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCAGGAGTTTGTCTCCCTGTGTATTTTAATGAACCGCTCTCTTCATTGCAAAAGTGTTTTGAAGATTTGGAGTATTCATATCTAGTTGATAGYGCATTGGAATGGGGAAAGCAGGAGAATGATTTGATGAGAATCCTAAATGTTGCAGCTTTTGCTGTGTCCGGCTATGCATCCACTGAAGGTCGGCAGTGCAAACCTTTCAATCCTCTACTTGGGGAGACATATGAAGCTGACTATCCAGATAAAGGTCTSAGATTCTTCTCTGAAAAGGTTAGTCATCATCCCATGGTTGTTGCTTGTCACTGTGAGGGAAGAGGATGGAAGTTCTGGGCGGACTCTAACTTGAAAGGGAAATTCTGGGGGCGTTCTATTCAGTTAGATCCTGTGGGTGTCCTCACCCTACAGTTTGAGGATGGTGAAACATTTCAYTGGAGCAAGGTCACCACTTCAATTTACAATATCATACTAGGTAAAATTTATTGTGATCACTATGGTACAATGCGCATCAAGGGCAGTGGCAACTACTCTTGCAAACTGAAGTTCAAAGAGCAATCTATCATAGATCGAAACCCACACCAGGTCCATGGATTTGTTCAAGACAACAGAACCGGAGAGAAGGTAGCAATGTTGATTGGGAAATGGGACGAAGCAATGTACTATGTCCTTGGGGACCCAACTACAAAGCCAAAAGGTTATGATCCAATGACAGAAGCTGCATTATTGTGGGAAAGGGACAACTGCAGCACCAAGACAAGATACAACCTCTCTCCTTTTGCAATATCATTGAATGAAATAATGCCCGGCATGATAGAGAAGTTACCTCCCACTGACTCAAGGTTGAGACCCGATCAAAGACATTTAGAAAATGGAGAATATGAGTTGGCGAATGCAGAGAAATTAAGACTAGAACAGTTGCAGAGACAGGCAAGAAAGATGCAGGAAAGAGGATGGCAGCCTAGATGGTTTCAGAAGAATGAGGATGGGTCTTACCGATACAAGGGTGGCTATTGGGAAGCAAGAGAAAAGCATAGTTGGGATGGAATCCCTGATATATTTGGACAGAGTTGTGATTTACCTTCATGTTCTGAAGATACAATCATTACTCTGTCCTAA 2472 0.4519 MNPLCCIAPVSIDRDRANPVATKSPTHCQLGLDASVRTVNGGSKSSSSAPDSSHGGGDSLKSSSGGNRGEEEDLSTTTAEPRESKVFGGGNGVAGSVAGILYKWVNYGKGWRSRWFVLDDGVLSYYKIHGPDKIVVSPARDRSVSVIGEESSKFVKKNNWSLNRVAGVSGGNSTKQCKPFGEIHLKVSSVRASKSDDKRLSIFTGTKTLHLRCVSREDRAMWIEALQSTKDLFPRALTSSDLATPEDIVVSTEKLRSRLSEEGISEAVINDCESIMLSEVSYLQGKLKFLQQKHVMLLDTLKQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSVMSEGSATDSVADNESQDGADVETDDDDGAFFDTNEFLCSDALRSASYRSREGMTNASIHDRDCLLSDGLHGFEKGIKDVSYPYVRRRDNLPEPKEKERPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDSALEWGKQENDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMVVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFHWSKVTTSIYNIILGKIYCDHYGTMRIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWERDNCSTKTRYNLSPFAISLNEIMPGMIEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQERGWQPRWFQKNEDGSYRYKGGYWEAREKHSWDGIPDIFGQSCDLPSCSEDTIITLS* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1006 823 MobiDBLite consensus disorder prediction 344 364 - -
Amo20g1006 823 SMART PH_update 95 233 IPR001849 -
Amo20g1006 823 MobiDBLite consensus disorder prediction 39 64 - -
Amo20g1006 823 MobiDBLite consensus disorder prediction 65 79 - -
Amo20g1006 823 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 810 - -
Amo20g1006 823 Coils Coil 748 768 - -
Amo20g1006 823 Pfam Pleckstrin homology domain 99 228 - -
Amo20g1006 823 Pfam Oxysterol-binding protein 441 794 IPR000648 GO:0008289
Amo20g1006 823 SUPERFAMILY Oxysterol-binding protein-like 436 807 IPR037239 -
Amo20g1006 823 Coils Coil 287 321 - -
Amo20g1006 823 SUPERFAMILY PH domain-like 16 228 - -
Amo20g1006 823 CDD PH_ORP_plant 97 235 - -
Amo20g1006 823 ProSiteProfiles PH domain profile. 94 231 IPR001849 -
Amo20g1006 823 Gene3D - 526 693 - -
Amo20g1006 823 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 810 IPR000648 GO:0008289
Amo20g1006 823 Gene3D - 94 233 IPR011993 -
Amo20g1006 823 Gene3D - 737 801 - -
Amo20g1006 823 MobiDBLite consensus disorder prediction 39 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1006 Amo-Chr20 17712662 17719504 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1006 K20456 - gmx:100788779 1436.4