Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0887 ATGCAAACCAAGAAAAAGGGCTCCAGACGAAATGCTACTCAACAGCACGGTAGTCCTCGAGTTTCAAGAACACAGAGGAAGGTATCTGAAAATGGGCAAGCAGTTGAAAGGAAAGTTGCTGACTTAATTACATCATCATGCAGAAAAAATAAATCTTTGACTGCACTTGAGAATAAAGCCGGAGAGTCAATTCCTTCAACAAATTTGAGTAATCAGTATGACTTTGTGGACCATGGGACTTCCAATGCTTGGTTGGAAAATGATGCTGTTAATGGTACTTCAGTAGATGTTTTGGGCTACAACAAGCAAGCTGCTCATGTGGAGTCTGGAACTATATTTTCTCCTGGATTTCACTTATCCAAAGGTTCTGGAGGAAAAGTTGTTGACAGAGTTGATTTTGTCAAAATTTTTCAGCATGAGGACCAAAATAGAATTTGTTCTGACCAAGGAACAGATTTGTCACTGGTGGATGCCATAGATGATCCTGATAGTCGAGGATGTGGCACTGCAATGGAAGTAGACATAAATAATTCATCCAACTATGACCAACACAGATGCGGTGATCCAATGCTGGATTTAAGCACAAATGATGTGAATGTTTGCAATTCTGATTTTGATGAAAATGTTTCCTTGGAAGTTTCTGCCATATATCTTGCCATGAAAAACTCAAAGCTGGAATGCAATGATGAACCTGGTCAGGAGTCTATGTCAGCAGATGTATGCCCGGAGGATGATGAATTTGAGGATTTTGATGACTTTGATCCTTACTTATTCATAAAGACCTTACCTGACTTGTCAACGGTGGTTCCTACCTTTAGACGATTGTTGCTACCTAAGCAGACACGGAGCTGTCCTCCTACTACTCTTGTCCTGGACTTGGATGAAACTTTGGTACATTCTACCCTTGAGCCTTGTGAGGATGTCGACTTCACTTTTCCCGTTAATTTCAATTCCGAAGAGCACATTGTATACGTACGCTGCCGCCCTCACCTCAGAGATTTCCTCAACAGAGTTTCTAGCCTTTTCGAGATAATTATATTTACAGCTAGTCAAAGCATTTATGCCGAGCAACTTCTAAACGTGCTTGATCCAAAGAGGAAGATATTTCGCCACCGTGTATACCGTGAATCCTGTGTTTATGTGGAGGGTAATTATCTCAAAGATTTAACAGTGCTTGGTCGTGATTTAGCTCGTGTTATAATAATTGACAACTCCCCTCAGGCATTTGGGTTCCAGGTGGACAATGGAATACCGATCGAGAGTTGGTTTGATGACCGTTCAGATCAAGAATTGCTTTTATTACTTCCATTCTTGGAGAGCCTGGTTGGAGTTGATGATGTACGGCCTTTAATCGCGAAGAAGTTCAATCTCCGGGAGAAAATTGCTGCGGCTGCCCTTCCTCTAAATACAAACAGGAGAGAGTTCTTATCGGAATGA 1437 0.4148 MQTKKKGSRRNATQQHGSPRVSRTQRKVSENGQAVERKVADLITSSCRKNKSLTALENKAGESIPSTNLSNQYDFVDHGTSNAWLENDAVNGTSVDVLGYNKQAAHVESGTIFSPGFHLSKGSGGKVVDRVDFVKIFQHEDQNRICSDQGTDLSLVDAIDDPDSRGCGTAMEVDINNSSNYDQHRCGDPMLDLSTNDVNVCNSDFDENVSLEVSAIYLAMKNSKLECNDEPGQESMSADVCPEDDEFEDFDDFDPYLFIKTLPDLSTVVPTFRRLLLPKQTRSCPPTTLVLDLDETLVHSTLEPCEDVDFTFPVNFNSEEHIVYVRCRPHLRDFLNRVSSLFEIIIFTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLARVIIIDNSPQAFGFQVDNGIPIESWFDDRSDQELLLLLPFLESLVGVDDVRPLIAKKFNLREKIAAAALPLNTNRREFLSE* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0887 478 ProSiteProfiles FCP1 homology domain profile. 282 441 IPR004274 -
Amo20g0887 478 SMART forpap2 285 429 IPR004274 -
Amo20g0887 478 CDD HAD_FCP1-like 288 419 - -
Amo20g0887 478 PANTHER INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED 1 465 - -
Amo20g0887 478 MobiDBLite consensus disorder prediction 12 29 - -
Amo20g0887 478 Pfam NLI interacting factor-like phosphatase 288 448 IPR004274 -
Amo20g0887 478 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 465 - -
Amo20g0887 478 SUPERFAMILY HAD-like 275 452 IPR036412 -
Amo20g0887 478 Gene3D - 272 456 IPR023214 -
Amo20g0887 478 MobiDBLite consensus disorder prediction 1 34 - -
Amo20g0887 478 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 287 450 IPR011948 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0887 Amo-Chr20 14617414 14622873 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0887 K17616 K12778 gmx:100804307 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0887 20 14617414 14622873 Amo20g0887 20 14617414 14622873 ECH
Amo20g0887 20 14617414 14622873 Amo10g0403 10 4097745 4103095 hybridization