Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0885 ATGGCCACCACCGAGAAAGAGGTGAAATTTGAGAACAAGAACAAAGAGCTGAAGCATCTTGGGTTTGTGAGGGTTGCTGCAATTCAAACCTTTGTGGTTGTCACAAATCTGTATGAATACGCAAAGCAAAACTCGGGCCCTTTGAGATCTGCCGTTGGGACGGTTGAGGGCACTGTAACTTCCGTTCTGGGCCCTGTCTACAACAAACTCAAGGATGTCCCAGATGATGTCCTCGTTTTTGTTGACAACAAGGTAGATGATGCTACTCACAAGTTCGGTGAGCATGCTCCTTCTTTTGCTAAGCAGGGTGCTTCCAAAGCAAGGAGTTTGATTCAGAGTCTTGCACATGAAGCCGGACGATTTGCAAGTGAGGTTCAATGTGGAGGGCCAAGAGCAGCTATACATTATGTAACCAGAGAGTCAAAGGATTTGGTGCTAATTAACTCAGTGAAGTTATGGAAAGGACTAAACCACTTCCCACCATTTCATGCACTGGCAGATGTGGCTGTGCCCACTGCTGCTCATTGTTCGGATAAGTATAACCACATAGTTAAGCATTTGAGTGGTAAAGGGTATCCTCTCTCTGGTTATTTGCCTTTGATTCCCGTCGATGACATTGCCAAGGCGTTCAGGCAGGGCGGTGAGGCAAGCATGAACGGAGGAGATGAAGAAGCCTGTAAGAATGGGAAGAGATCATAA 699 0.4649 MATTEKEVKFENKNKELKHLGFVRVAAIQTFVVVTNLYEYAKQNSGPLRSAVGTVEGTVTSVLGPVYNKLKDVPDDVLVFVDNKVDDATHKFGEHAPSFAKQGASKARSLIQSLAHEAGRFASEVQCGGPRAAIHYVTRESKDLVLINSVKLWKGLNHFPPFHALADVAVPTAAHCSDKYNHIVKHLSGKGYPLSGYLPLIPVDDIAKAFRQGGEASMNGGDEEACKNGKRS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0885 232 Pfam Rubber elongation factor protein (REF) 12 212 IPR008802 -
Amo20g0885 232 PANTHER RUBBER ELONGATION FACTOR-RELATED 2 225 - -
Amo20g0885 232 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 2 225 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0885 Amo-Chr20 14530545 14532731 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0885 - - gmx:100816931 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0885 20 14530545 14532731 Amo20g0885 20 14530545 14532731 ECH
Amo20g0885 20 14530545 14532731 Amo10g0400 10 4062343 4064835 hybridization