Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0884 ATGAGAACCAGAAGAGGAGGCCTCTCTTATCCTCCACTTCTACCCTTATCCACCATGTGTTCAAACAAAGCTCTCTCAGAAAGGTCCTCTTTCAACACACTCACACCACGCCCCAATAGAAACAGAAACAACAAAATGCCTTCTTCGCAACAACAATTTGTTATCCGTAAAAGGCACAAGACATTATCATTATTATCATCTTCCTCTTCCGACACAACAACAACAACAGTCGGAGGCTCCGAACTCTTGGAGATTTTGCCGGATGACCTTCTCCTCTCAATCCTCGCGAAACTTAGTTCGTCCTCCAATTCTCCTTCCGATTTCATCCGTGTTCTTTTGACGTGTAAAAGGCTGAACACGTTGGGTCTTCACTCGATGGTTCTATCAAAAGCATCCCAAAAAACATTCTCAGTCAAAGCCAGAAGCTGGTCAGAATCTTCTCACCGCTTCCTCAAACGTTGCGCTGATGCCGGAAACATCGAAGCATGCTACACTCTTGGAATGATTCGGTTCTACTGTTTAGAACACCGTGAGAGTGGAAGGTCGCTAATATCGAAGGCGGCGATGAGGTGTCACGCGCCGGCACTTTACTCTCTGGCCGTTTTACAGTTCAATGGGAGCGGAGCCTCGAAGGACGACAAGGACCTAAGGGGCGGTGTGGCTCTTTGCGCACGCGCCGCATTCCTCGGCCACGTCGACGCGCTGCGCGAGTTGGGTCATTGCTTGCAAGACGGTTACGGAGTTAAGCAAAACGTTATGGAAGGGCGACGGTTTCTCGTTCAAGCCAACGCGCGTGAGCTGGCGTCCGTTTGCAACAGCCTCCACGCGCGCACTAATATCACGTGGAGCATTGTGCCGAACCAGAACCCGAACTTAAATCCAAGGGTCCAGTATGCTGCAGGGTGTCCGTTGCTAAGTGATTACGGCTGTAACGTCCCGGCCCAGGAGCCACACCTTGCGAACCGGTTCATGATTGAGTGGTTTTCGAACCGGGGTGGTTCGGCCGGGCCGAATCGGAGGCTGTGTTCACATTTGGGTTGTGGAAGGCCTGAAACGAGGAAGAGAGAGTTTCGGAGATGTTCGGTTTGTGGAGTGGTTAATTATTGCTCACGCGCTTGCCAAGCACTTGACTGGAAGAGTCGGCATAAAGTGGAGTGTGCTCCTGTTGAGAGGTGGATCGACGATGACGACGGTGAAGACGGCGGTGAGGTGGCAGTGGTGGATAGTTAG 1230 0.5146 MRTRRGGLSYPPLLPLSTMCSNKALSERSSFNTLTPRPNRNRNNKMPSSQQQFVIRKRHKTLSLLSSSSSDTTTTTVGGSELLEILPDDLLLSILAKLSSSSNSPSDFIRVLLTCKRLNTLGLHSMVLSKASQKTFSVKARSWSESSHRFLKRCADAGNIEACYTLGMIRFYCLEHRESGRSLISKAAMRCHAPALYSLAVLQFNGSGASKDDKDLRGGVALCARAAFLGHVDALRELGHCLQDGYGVKQNVMEGRRFLVQANARELASVCNSLHARTNITWSIVPNQNPNLNPRVQYAAGCPLLSDYGCNVPAQEPHLANRFMIEWFSNRGGSAGPNRRLCSHLGCGRPETRKREFRRCSVCGVVNYCSRACQALDWKSRHKVECAPVERWIDDDDGEDGGEVAVVDS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0884 409 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 78 403 - -
Amo20g0884 409 MobiDBLite consensus disorder prediction 27 51 - -
Amo20g0884 409 Pfam MYND finger 347 386 IPR002893 -
Amo20g0884 409 PANTHER MYND DOMAIN-CONTAINING 78 403 IPR044508 -
Amo20g0884 409 Gene3D Tetratricopeptide repeat domain 124 277 IPR011990 GO:0005515
Amo20g0884 409 SUPERFAMILY HCP-like 147 264 - -
Amo20g0884 409 Gene3D - 332 390 - -
Amo20g0884 409 ProSiteProfiles Zinc finger MYND-type profile. 344 386 IPR002893 -
Amo20g0884 409 SUPERFAMILY HIT/MYND zinc finger-like 341 391 - -
Amo20g0884 409 SUPERFAMILY F-box domain 78 142 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0884 Amo-Chr20 14502388 14503992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0884 - - adu:107468872 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0884 20 14502388 14503992 Amo20g0884 20 14502388 14503992 ECH