Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0875 ATGAGAACCAGAAGAGGAGGCCTCTCTTATCCTCCACTTCTACCCTTATCCACCATGTGTTCCAACAAAGCTCTTTCAGAAAGGTCCTCTTTCAACACACTCACACCACTCCCCAATAGAAACAGAAACAACAAAATGCCTTCTTCGCAACAACAATTCGTTAGCCGTAAAAGGCACAAGACATTATCATTATTATCATCTTCCTCTTCCGACACAACAACAACAACAGTCGGAGGCTCCGAACTCTTGGAGACCTTGCCGGATGACATTCTCCTCTCAATCCTCGCGAAACTTAGTTCGTCCTCCAATTCTCCTTCCGATTTCATCCGTGTTCTTTTGACGTGTAAAAGGCTGAACAGGTTGGGTCTTCACTCAGTGGTTCTATCAAAAGCATCCCAAAAAACATTCTCAGTCAAAGCCAGAAACTGGTCAGAATCTTCTCACCGCTTCCTCAAACGTTGCGCTGATGCCGGAAACATCGAAGCATGCTACACTCTTGGAATGATTCGGTTCTACTGTTTAGGAAACCGTGAGAGTGGAAGGTCGCTTATATCGAAGGCGGCGATGAGGTGTCACGCGCCGGCACTTTACTCTCTGGCCGTTATACAGTTCAATGGGAGCGGAGCCTCGAAGGACGACAAGGACCTAAGGGGCGGTGTGGCTCTTTGCGCACGCGCCGCATTCCTCGGCCACGTCGACGCGCTGCGCGAGTTGGGTCATTGCTTGCAAGACGGTTACGGAGTTAAGCGAAACGTTATGGAAGGGCGACGGTTTCTCGTTCAAGCCAACGCGCGTGAGCTGGTGTCCGTTTGCAACAGCCTCCACGCGCGCACTACTATCACGTGGGGCGTTATGCCGAACCAGAACCCGAACCTAAATCCAAGGGTCCAGTATGCTGCAGGGTGTCCGTTGCTAAGTGATTACGGCTGTAACGTCCCCGCTCAGGAGCCACACCTTGCGAACCGGTTCATGATTGAGTGGTTTTCGAACCGGGGTGGTTCGGCCGGGCCGAGTCGGAGGCTGTGTTCACATTTGGGTTGTGGAAGGCCTGAAACGAGGAAGAGAGAGTTTCGGAGATGTTCGGTTTGTGGAGTGGTTAATTATTGCTCACGCGCTTGCCAAGCACTTGACTGGAAGAGTCGGCATAAAGTGGAGTGTGCTCCTGTTGAGAGGTGGATCGACGATGACGACGGTGAAGATGGCGGTGAAGTGGCAGTGGTGGATAGTTAG 1230 0.5163 MRTRRGGLSYPPLLPLSTMCSNKALSERSSFNTLTPLPNRNRNNKMPSSQQQFVSRKRHKTLSLLSSSSSDTTTTTVGGSELLETLPDDILLSILAKLSSSSNSPSDFIRVLLTCKRLNRLGLHSVVLSKASQKTFSVKARNWSESSHRFLKRCADAGNIEACYTLGMIRFYCLGNRESGRSLISKAAMRCHAPALYSLAVIQFNGSGASKDDKDLRGGVALCARAAFLGHVDALRELGHCLQDGYGVKRNVMEGRRFLVQANARELVSVCNSLHARTTITWGVMPNQNPNLNPRVQYAAGCPLLSDYGCNVPAQEPHLANRFMIEWFSNRGGSAGPSRRLCSHLGCGRPETRKREFRRCSVCGVVNYCSRACQALDWKSRHKVECAPVERWIDDDDGEDGGEVAVVDS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0875 409 SUPERFAMILY HIT/MYND zinc finger-like 341 391 - -
Amo20g0875 409 MobiDBLite consensus disorder prediction 31 54 - -
Amo20g0875 409 Pfam MYND finger 347 386 IPR002893 -
Amo20g0875 409 PANTHER MYND DOMAIN-CONTAINING 78 403 IPR044508 -
Amo20g0875 409 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 78 403 - -
Amo20g0875 409 ProSiteProfiles Zinc finger MYND-type profile. 344 386 IPR002893 -
Amo20g0875 409 SUPERFAMILY HCP-like 147 263 - -
Amo20g0875 409 Gene3D - 331 390 - -
Amo20g0875 409 SUPERFAMILY F-box domain 78 139 IPR036047 GO:0005515
Amo20g0875 409 Gene3D Tetratricopeptide repeat domain 124 276 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0875 Amo-Chr20 14075887 14077588 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0875 - - adu:107468872 741.11