Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0845 ATGTACGGATCCGAGAATAACAGGGAAGATTCGGAGCGGACCGCTTTCAGAAGAGCGGAGAAGAATTACAAGCTCTACTACGATACCAATGCTTCCAAGAACAAAAAGAAGAAAAAACCCAAACCGGTGGACTTGACGGAAGTTCTTGACTTCCGTTCAATTTTAGAATGCCACGATCGAAACGGCGAGCTTCCTCCGTTTGTTAAATTCACGACAAGTTCAGCTCCGCTTGTTCTGCCTTGCAAAATCGCCAGCGGTTTTTATTTTATTCCTGGGGCGTTGAGCATAGAGAAACAATGCAGTTTGATAAGGGAGAGTTTGATTGATTTCCCACAGCCACCTAATAGAACAAATCACAATGCGATCTATGGTCCTATACACAATCTATTTGATGAAGCAAAAGAAGGGAAGGTTCTGGTAGAAGAGTACTCTCCCGATGGTTCACCTAAGCTAGGTCCTGATTGCGATTATCAAGATGGTAAGAGGTGGAAGTTCGTAACAGAAAAGGAAGAGCTATTAAGGAAGGGAAAATCTGTTCCTGCTTCTGCTTTGCTGCGGAAGCTGAGATGGAGCACCCTTGGCCTACAATTCAATTGGTCCAGACGGAACTATGATGTATCTCTCCCACATAACAAAATCCCTGAAGCTCTGTGTGATCTGGCCAAAGAATTGGCTAAACCTGCAATGCCTGCTGGTGTTGAATTCCAGCCTGAAGGTGCAATAGTGAATTACTTTGGTTTAGGTGACACACTGGGTGGCCACCTTGATGACATGGAAGCAGACTGGAGCAAGCCTATAGTTAGCTTAAGTTTGGGCTGCAAAGCTATATTTCTTTTGGGTGGAAAAACTAGAGAGGATCCTCCRTTGGCAATGTTTCTTAGAAGTGGTGATGTTGTACTCATGGCCGGAGAAGCAAGGGAATGCTTTCATGGTGTTCCACGGATATTCACAGATGAAAAAAATGCTGAAATAGACCATCTTCAGGCACAACTTTCACATGAAGATGATCTTTGTTTCTTAAAATACATTCAAACTTCAAGGATCAATATCAACATCAGACAAGTTTTTTGA 1071 0.4304 MYGSENNREDSERTAFRRAEKNYKLYYDTNASKNKKKKKPKPVDLTEVLDFRSILECHDRNGELPPFVKFTTSSAPLVLPCKIASGFYFIPGALSIEKQCSLIRESLIDFPQPPNRTNHNAIYGPIHNLFDEAKEGKVLVEEYSPDGSPKLGPDCDYQDGKRWKFVTEKEELLRKGKSVPASALLRKLRWSTLGLQFNWSRRNYDVSLPHNKIPEALCDLAKELAKPAMPAGVEFQPEGAIVNYFGLGDTLGGHLDDMEADWSKPIVSLSLGCKAIFLLGGKTREDPPLAMFLRSGDVVLMAGEARECFHGVPRIFTDEKNAEIDHLQAQLSHEDDLCFLKYIQTSRININIRQVF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0845 356 Pfam 2OG-Fe(II) oxygenase superfamily 175 353 IPR027450 -
Amo20g0845 356 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED 1 356 IPR004574 -
Amo20g0845 356 Gene3D - 131 355 IPR037151 -
Amo20g0845 356 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 236 356 IPR005123 -
Amo20g0845 356 SUPERFAMILY Clavaminate synthase-like 83 355 - -
Amo20g0845 356 PANTHER ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0845 Amo-Chr20 13115515 13118170 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0845 K10765 - gmx:100811774 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0845 20 13115515 13118170 Amo20g0845 20 13115515 13118170 ECH