Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0829 ATGGACTTGTCTCATCCCCACTCCAATTTGTCGCTCGGCTTCTCATCCTCTCACGCGTCGCCGCCACGCCGCCCTCCAATCCCCGACGAATCTATCACCCTCCAGCTCGAATCCAGCCTCCGTGACCCTTCCCACCCTCTCCCTCCGGTTCCCCTCCAGCTCCTCGAGCCCCAAACAGCCACCGATAACGGCAACCACGATTCCGAGTTCAACGACGCCGCCGACGATGAAGACGACAGGGACGTCGAGGAATTTCGCATCCTAGGCCACTCAATGTGCCTCAAGAGGCGAAGAGATTGCGATTCCTCATCCTCTTCCTCAATCTCTTCCTCCAAGAGGGTTTCCGTTTCCCACGAATCTGATCTCGAGGCACGGAGAGCTTTGGTTCGCTCATGGGGGAACCAATCCTTGCAGCTTGCGGACCCCGACGTCTTCGACATAATGGAGAAGGAGAAGAGAAGGCAGTACAGAGGGATTGAATTGATCGCCTCCGAGAATTTTGTATGCAAAGCCGTTATGGAAGCTCTTGGGAGCCATTTGACTAACAAGTACTCCGAGGGAATGCCCGGTGCTCGCTACTATGGAGGTAACCAATATATCGATGAGATTGAAACCTTGTGTTGTGAGCGTGCTTTGCTTGCGTTTAATCTTGACCCCAAGTGTTGGGGTGTCAATGTTCAGCCATATTCGTGTACCTCTGCGAATTTCGCAGTTTACACCGGGTTGCTATTGCCCGGTGATCGTATCATGGGGTTGGATACACCCTCTGGAGGGAACACTAGCCATGGTTACTATACTCCCAATGGGAAGAAAGTTTCCGGTGCCTCGATTTTCTTTGAGAGCTTGCCTTATAAGGTGAACCCACAAACTGGGTATGTTGATTATGAGAAGCTTGAGGAGAGGGCGCTTGATTTTCGTCCCAAGATACTTATTTGCGGTGGGAGTTCGTACCCTCGAGAATGGGATTACTCAAGGTTTAGGCACATTGCGGATAAATGTGGAGCTGTTTTGATGTGTGATATGGCACAAATAAGTGGGCTAATTGCAGCCAAGGAATGTTCAAACCCTTTTGACTATTGTGATATTGTTACTTCAACAACTCACAAGAGTCTTCGTGGTCCAAGGGGAGGCATAATTTTTTATCGGAAGGGTGCAAAACCAAGGAAGAGAGGGATTCTGCTAAGTCAGGGAAATGAAAGTGATCAGTATGACTTTGAGGAAAAGATAAATTTTGCTGTTTTTCCATCGTTGCAAGGGGGCCCACACAATAACCATATTGCTGCTCTTGCTATAGCTTTAAAACAAGTGGCTACTCCTGAGTATAAGGCATACATGCATCAAGTGAAGAAAAATGCTCAGGCCTTAGCATCTGCTTTATTGAGAAGGAAATGCCGCCTAGTAACTGGGGGTACAGACAACCACTTAGTGCTTTGGGATTTAAGGCCTCTTGGATTGACAGGTAAATTTTATGAGAAGGTCTGTGAGGCATGTCATATTACTTTGAATAAGATTGCTATTTTTGGTGACAATGGAGTTATTATTCCCGGAGGTGTAAGAATAGGTACCCCTGCCATGACTTCAAGAGGATGTTTAGAAGCTGATTTTGAGACAATGGCTGAATTTCTGTTTAGAGCCGCGCAACTTGCAAACGTATTGCAGAGGGAGCATGGGAAAATGCAGAAGACAGTTTTGAAGGGGCTTGATAGCAGTAGGGATGTTGTTGATCTCCGGGCTCGGGTTGAAGCTTTTGCAACTCAATTTGCAATGCCTGGTTTTGACATTTGA 1785 0.4756 MDLSHPHSNLSLGFSSSHASPPRRPPIPDESITLQLESSLRDPSHPLPPVPLQLLEPQTATDNGNHDSEFNDAADDEDDRDVEEFRILGHSMCLKRRRDCDSSSSSSISSSKRVSVSHESDLEARRALVRSWGNQSLQLADPDVFDIMEKEKRRQYRGIELIASENFVCKAVMEALGSHLTNKYSEGMPGARYYGGNQYIDEIETLCCERALLAFNLDPKCWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDTPSGGNTSHGYYTPNGKKVSGASIFFESLPYKVNPQTGYVDYEKLEERALDFRPKILICGGSSYPREWDYSRFRHIADKCGAVLMCDMAQISGLIAAKECSNPFDYCDIVTSTTHKSLRGPRGGIIFYRKGAKPRKRGILLSQGNESDQYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMHQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRPLGLTGKFYEKVCEACHITLNKIAIFGDNGVIIPGGVRIGTPAMTSRGCLEADFETMAEFLFRAAQLANVLQREHGKMQKTVLKGLDSSRDVVDLRARVEAFATQFAMPGFDI* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0829 594 Gene3D - 166 446 IPR015421 GO:0003824
Amo20g0829 594 Gene3D Aspartate Aminotransferase, domain 1 141 590 IPR015422 GO:0003824
Amo20g0829 594 CDD SHMT 141 583 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Amo20g0829 594 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 82 594 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Amo20g0829 594 MobiDBLite consensus disorder prediction 1 79 - -
Amo20g0829 594 Pfam Serine hydroxymethyltransferase 138 541 IPR039429 -
Amo20g0829 594 Hamap Serine hydroxymethyltransferase [glyA]. 136 591 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Amo20g0829 594 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 361 377 IPR019798 GO:0030170
Amo20g0829 594 SUPERFAMILY PLP-dependent transferases 129 593 IPR015424 -
Amo20g0829 594 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 82 594 - -
Amo20g0829 594 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0829 Amo-Chr20 12738332 12740620 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0829 K00600 - gmx:100810926 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0829 20 12738332 12740620 Amo20g0829 20 12738332 12740620 ECH
Amo20g0829 20 12738332 12740620 Amo10g0467 10 4629783 4632049 hybridization