Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0725 ATGGGTGTGACTAAGATCTCAACAATGCTTCCTCTCATGGCTGCCATAACCCTAACCATATTATTATTATCACAAGTTTGTTATGCACAAGACGCACCCCAAGACTACATCAACGCTCACAACAATGCCCGTTCCCAAGTTGGGGTTGGTCCAATGACATGGAATGCAACCCTTGCTTCTTTTGCACAAAACTATATTAACACACTCAAAGGAAGTTGTAGCTTGGTGCACTCTGGGGGTCCTTATGGAGAGAACCTTGCAGGGAGTACCGGCGATCTTACGGGCACGGCCGCGGTGAACTTGTGGGTGGCGGAGAAGCAATACTATCACTACAACTCTAATTCTTGTGACTCCGGCAAGGTTTGCGGCCACTATACTCAGGTGGTTTGGCGCAACTCGATTCATCTTGGGTGTGCCAAAGTGAGGTGTGATAATGGAGGAACAGTTATAAGTTGTAACTATGCTCCCCGTGGCAATATTATTCGCAACATAATCAACAAGGAGTGCAGCCATGCTTGTAAGCCAAGTGTGCCACCCCACTTTCAACTTGCAAGGTTAGGCATTGTGGCTGATATAACCGCCTATGCTCAAGATTCACCGCAAGACTATCTTGATGCTCACAACGCAGCAAGATCAGAGGCAGGTGTTGCCGATTTGGTTTGGGACGACGACGTTGCGGCGTTCGCCGAGAACTACGCAACGGAACGGCAAGGGGACTGCGAAATGATCCACTCCGGTGGCGGCGACGAGGGTTACGGCGAGAACATTGCATGGAGCAGTGGTGATCTTGCAGGCAGCGAAGCAGTGGGAATGTGGGTGGATGAGAAAGACAAGTATGAGTACGATTCAAACTCATGTGTTGGCGGAGAGTGCCGTCACTACACTCAAGTTGTTTGGAGTAACACTATTCGGCTTGGATGTGCCAAAGTGAATTGCGATAATGGAGGCACTTTCATTACTTGTAACTACCATCCTCCTGGAAATTATGTTCACCAAAGGCCTTACTAG 1008 0.4871 MGVTKISTMLPLMAAITLTILLLSQVCYAQDAPQDYINAHNNARSQVGVGPMTWNATLASFAQNYINTLKGSCSLVHSGGPYGENLAGSTGDLTGTAAVNLWVAEKQYYHYNSNSCDSGKVCGHYTQVVWRNSIHLGCAKVRCDNGGTVISCNYAPRGNIIRNIINKECSHACKPSVPPHFQLARLGIVADITAYAQDSPQDYLDAHNAARSEAGVADLVWDDDVAAFAENYATERQGDCEMIHSGGGDEGYGENIAWSSGDLAGSEAVGMWVDEKDKYEYDSNSCVGGECRHYTQVVWSNTIRLGCAKVNCDNGGTFITCNYHPPGNYVHQRPY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0725 335 ProSitePatterns CRISP family signature 2. 149 160 IPR018244 GO:0005576
Amo20g0725 335 Gene3D CAP 31 165 IPR035940 -
Amo20g0725 335 Gene3D CAP 198 335 IPR035940 -
Amo20g0725 335 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 23 161 IPR001283 -
Amo20g0725 335 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 193 335 IPR001283 -
Amo20g0725 335 Pfam Cysteine-rich secretory protein family 38 154 IPR014044 -
Amo20g0725 335 Pfam Cysteine-rich secretory protein family 204 323 IPR014044 -
Amo20g0725 335 SMART SCP_3 31 162 IPR014044 -
Amo20g0725 335 SMART SCP_3 198 331 IPR014044 -
Amo20g0725 335 CDD CAP_PR-1 33 161 - -
Amo20g0725 335 SUPERFAMILY PR-1-like 197 335 IPR035940 -
Amo20g0725 335 CDD CAP_PR-1 200 335 - -
Amo20g0725 335 PRINTS Venom allergen 5 signature 145 156 IPR002413 -
Amo20g0725 335 PRINTS Venom allergen 5 signature 219 237 IPR002413 -
Amo20g0725 335 PRINTS Venom allergen 5 signature 266 281 IPR002413 -
Amo20g0725 335 PRINTS Venom allergen 5 signature 290 309 IPR002413 -
Amo20g0725 335 PANTHER PATHOGENESIS-RELATED PROTEIN 1 23 161 - -
Amo20g0725 335 ProSitePatterns CRISP family signature 2. 318 329 IPR018244 GO:0005576
Amo20g0725 335 PRINTS Allergen V5/Tpx-1 family signature 122 138 IPR001283 -
Amo20g0725 335 PRINTS Allergen V5/Tpx-1 family signature 318 331 IPR001283 -
Amo20g0725 335 PRINTS Allergen V5/Tpx-1 family signature 98 111 IPR001283 -
Amo20g0725 335 PRINTS Allergen V5/Tpx-1 family signature 52 70 IPR001283 -
Amo20g0725 335 SUPERFAMILY PR-1-like 27 166 IPR035940 -
Amo20g0725 335 ProSitePatterns CRISP family signature 1. 292 302 IPR018244 GO:0005576
Amo20g0725 335 ProSitePatterns CRISP family signature 1. 123 133 IPR018244 GO:0005576
Amo20g0725 335 PANTHER PATHOGENESIS-RELATED PROTEIN 1 193 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0725 Amo-Chr20 10552325 10558013 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0725 K13449 - zju:107413742 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0725 20 10552325 10558013 Amo20g0725 20 10552325 10558013 ECH