Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0716 ATGGATTCATTCTCTGTTGTGTTGTGTGTGTTAGGGTTAGTGATTGTGGGTCATGTGGCCTATGCCCAAGACTCACAACAAGACTACCTTGATGCTCACAACGCAGCAAGATCCGAGGTTGGTGTTCCAAACTTGTCTTGGGATGACACCGTTGCAGCCTATGCACAAAACTACGCCAATCAGCGAAAAGGTGATTGCCAATTGGTCCATTCCGATGGCCAATATGGGGAGAACATTGCAGGGGGCAGCGGCGACTTTTCCGGCACGGTTGCCGTGAAATTATGGGTGGACGAGAAGCAATATTATGATTATGATTCTAATAGTTGTGCGAGTGGTCAAGTATGTGGCCACTATACACAGGTAATTTGGCGCGATTCGATAAGACTTGGGTGCGCCAAAGTAACTTGTAATAATAATGCGGGCACTTTTATTATTTGTAGCTATGATCCAGCTGGCAACATTATTGGCCAAAAGCCTTACTAA 483 0.4576 MDSFSVVLCVLGLVIVGHVAYAQDSQQDYLDAHNAARSEVGVPNLSWDDTVAAYAQNYANQRKGDCQLVHSDGQYGENIAGGSGDFSGTVAVKLWVDEKQYYDYDSNSCASGQVCGHYTQVIWRDSIRLGCAKVTCNNNAGTFIICSYDPAGNIIGQKPY* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0716 160 ProSitePatterns CRISP family signature 1. 116 126 IPR018244 GO:0005576
Amo20g0716 160 ProSitePatterns CRISP family signature 2. 143 154 IPR018244 GO:0005576
Amo20g0716 160 PANTHER PATHOGENESIS-RELATED PROTEIN 1B-LIKE 4 160 - -
Amo20g0716 160 SMART SCP_3 24 156 IPR014044 -
Amo20g0716 160 CDD CAP_PR-1 26 160 - -
Amo20g0716 160 SUPERFAMILY PR-1-like 2 160 IPR035940 -
Amo20g0716 160 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 4 160 IPR001283 -
Amo20g0716 160 PRINTS Allergen V5/Tpx-1 family signature 45 63 IPR001283 -
Amo20g0716 160 PRINTS Allergen V5/Tpx-1 family signature 91 104 IPR001283 -
Amo20g0716 160 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Amo20g0716 160 PRINTS Allergen V5/Tpx-1 family signature 143 156 IPR001283 -
Amo20g0716 160 Pfam Cysteine-rich secretory protein family 30 148 IPR014044 -
Amo20g0716 160 Gene3D CAP 23 160 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0716 Amo-Chr20 10453361 10453843 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0716 K13449 - gmx:547547 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0716 20 10453361 10453843 Amo20g0716 20 10453361 10453843 ECH
Amo20g0716 20 10453361 10453843 Amo10g0014 10 220799 221858 hybridization