Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0711 ATGTCTCACAGTTTCACCAATCCCTTGTTCTTATTCTTGCCAATGGATTATATGTTCATTTTTGGAAGTGTCATAGCTTCTGGTTTGGTGTTTGTGCTTGTTCTGTACGGTTCTGCATCAAACAAGAGAAAATCCAGTGTTCCAAGTGCAACAACACATGCACAAAGTATAAAGACATCAGAAAATGGTACATGGACTCCACCACAAGTCTCAGAAGGATGTGATGACATCATTATTGTAGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTTCACTCTTGGAAAGGATGGAAGACGAGTTCATGTTATCGAAAGGGACTTGAATGAACAAGAGAGGATTGTGGGTGAATTGCTTCAACCTGGGGGATATCTTAAGCTGATTGAGTTAGGACTTGAGGATTGTGTGGATGAAATTGATGCACAACAAGTCTTTGGCTATGCCCTTTACAAAGATGGGAAAAATACCAAGCTCTCTTATCCCTTGGAAAAGTTTAGTTCTGATATTTCCGGTAAAAGCTTTCACAATGGCCGTTTCATCCAAAGAATGCGAGCGAAGGCTTCTTCTCTTCCCAATGTAAAYTTAGAACAAGGAACTGTCACATCTCTATTAGAAGAAAATGGAATTGTCAAAGGAGTTCACTACAAAACTAAGAGTGGAGAAGAGCTTACAGCAAAGGCTCCTCTCACCATAGTTTGTGATGGTTGTTTTTCCAACTTAAGGCGTTCTCTTTGCAATCCTAAGGTTGATCTACCATCTTATTTTGTTGGTCTGATCCTGGAGAATTGTAATCTTCCATATGCAAACCATGGACATGTTATCTTAGGTGATCCTTCACCAATCTTGTTTTATCCAATCAGCAGCACTGAAATTCGGTGTTTGGTGGATGTGCCTGGCCAAAAACTACCTTCTCTTGGCAATGGCGACATGGCACGTTATCTGAAAACAGTGGTGGCTCCTCAGGTGCCTTCAGAGCTGCATGATTCTTTTATAGCAACAGTGGAAAAAGGGAACATAAGAAGCATGCCAAATAGAAGCATGCCTGCATCTCCATATCCAACACCTGGTGCTCTTCTAATGGGTGACGCATTCAATATGCGTCACCCTTTAACAGGAGGGGGAATGACTGTGGCTTTGTCTGACATTGTTCTGCTAAGAGATCTTCTTAGGCCTTTGCGCGATCTCCATGATTCTACTGCTCTTTGCAAGTATCTTGAATCATTCTACACTCTACGTAAGCCAGTGGCATCAACCATAAACACATTGGCAGGTGCATTGTACAAGGTGTTCTGCGCATCACCTGATCCGGCTAGGAAGGAAATGAGGCAAGCATGTTTTGATTATTTGAGCCTTGGAGGTGTGTTCTCTCAGGGACCAATAGCTCTACTCTCTGGTCTCAATCCTCGCCCATTGAGCTTGGTTCTCCATTTCTTTGCTGTCGCTATATATGGCGTTGGCCGCTTGCTCGTGCCATTTCCTTCGCCAACACGCATGTGGATTGGAGCTAGATTGATCTCTGGAGCATCAGGTATAATCTTCCCTATTATCAAGGCTGAAGGAGTTAGACAAATGTTCTTCCCAGTAACTGTGCCAGCATACTACAGAACTCCCCCTGTTAATTTGCAGAACTAA 1629 0.4322 MSHSFTNPLFLFLPMDYMFIFGSVIASGLVFVLVLYGSASNKRKSSVPSATTHAQSIKTSENGTWTPPQVSEGCDDIIIVGAGVAGAALAFTLGKDGRRVHVIERDLNEQERIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDGKNTKLSYPLEKFSSDISGKSFHNGRFIQRMRAKASSLPNVNLEQGTVTSLLEENGIVKGVHYKTKSGEELTAKAPLTIVCDGCFSNLRRSLCNPKVDLPSYFVGLILENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGDMARYLKTVVAPQVPSELHDSFIATVEKGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRDLLRPLRDLHDSTALCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSQGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLVPFPSPTRMWIGARLISGASGIIFPIIKAEGVRQMFFPVTVPAYYRTPPVNLQN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0711 542 Pfam Squalene epoxidase 225 498 IPR013698 GO:0004506|GO:0016021|GO:0050660
Amo20g0711 542 SUPERFAMILY FAD/NAD(P)-binding domain 76 450 IPR036188 -
Amo20g0711 542 MobiDBLite consensus disorder prediction 42 65 - -
Amo20g0711 542 Pfam NAD(P)-binding Rossmann-like domain 79 105 - -
Amo20g0711 542 PANTHER SQUALENE MONOOXYGENASE 15 541 IPR040125 GO:0004506|GO:0016126
Amo20g0711 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 368 - -
Amo20g0711 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 76 98 - -
Amo20g0711 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 225 240 - -
Amo20g0711 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 368 384 - -
Amo20g0711 542 Gene3D - 75 455 IPR036188 -
Amo20g0711 542 PANTHER SQUALENE MONOOXYGENASE-RELATED 15 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0711 Amo-Chr20 10381736 10385079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0711 76 537 Miscellaneous Gene Families AT1G58440 79.870 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0711 K00511 - gmx:100796946 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0711 20 10381736 10385079 Amo20g0711 20 10381736 10385079 ECH
Amo20g0711 20 10381736 10385079 Amo10g0006 10 159485 162945 hybridization