Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0455 ATGGCAGCAGCCGCGGTGCTTCGCTCTCTTCGCCGCCGTGATGTCGCCTCTGCTTCCGTCTCAGCCTTTCGTTCGTTGTCGGGTAGCACTAAACCAGCTTATGTAGCTCACAAGTGGTCAAGTTTGTGTCGACCATTCAGTTCTCGGCCTGCTGGAAATGATGTTATCGGTATTGATTTGGGTACTACAAATTCCTGTGTTGCTGTTATGGAAGGAAAGAATCCTAAAGTTATTGAAAACTCTGAAGGTTCTCGAACAACACCATCTGTGGTTGCTTTCAACCAGAAAGGGGAGCTGCTTGTTGGTACACCGGCAAAACGTCAGGCAGTAACAAACCCAACAAACACCGTTTTTGGTACCAAGCGGTTGATTGGTCGGCGCTTTGACGATCCCCAAACACAGAAGGAGATGAAAATGGTTCCTTACAAGATTGTTAAGGCTCCAAATGGAGATGCGTGGGTTGAAGCTAATGGCCAGCAATATTCTCCTAGCCAAATTGGTGCCTTTGTTCTCACCAAGATGAAGGAGACAGCAGAAGCTTATCTAGGGAAGTCAATTTCCAAGGCTGTAATTACTGTACCAGCTTACTTCAATGATGCTCAGAGGCAGGCAACAAAAGATGCTGGTAGAATTGCAGGTCTTGATGTGCAGAGAATTATCAATGAGCCAACAGCTGCAGCACTTTCATATGGGATGAACAACAAAGAGGGCCTTATTGCGGTTTTTGATCTTGGAGGTGGAACATTTGATGTCTCCATCTTGGAAATCTCTAATGGTGTCTTTGAGGTGAAAGCAACAAATGGTGACACATTCTTGGGAGGAGAGGACTTTGACAATGCCTTACTGGACTTCCTTGTAAGCGAATTCAAGAGGACCGACAGTATTGACCTTTCAAAAGACAGGCTTGCTTTGCAGAGACTTCGTGAAGCAGCAGAGAAGGCTAAGATAGAACTGTCGTCAACATCTCAAACCGAAATAAACCTTCCTTTCATCACTGCCGATGCATCTGGTGCAAAGCATCTGAACATCACATTGACCAGATCCAAGTTTGAGGCTTTGGTGAATCACTTGATTGAAAGGACCAAGGCACCATGTAAGAGCTGCTTGAAGGATGCTAATATATCTATCAAGGATGTTGATGAGGTCCTTCTTGTGGGAGGGATGACCCGTGTGCCTAAAGTCCAGGAAGTGGTTTCAGCTATCTTTGGAAAGTCTCCTAGCAAAGGAGTAAATCCTGATGAGGCAGTTGCCATGGGAGCAGCAATCCAGGGTGGTATCCTACGTGGAGATGTTAAAGAGCTATTGCTACTTGATGTTACCCCACTTTCTCTTGGTATTGAGACTTTGGGTGGTATTTTTACTAGGTTGATCAACCGCAACACTACTATTCCTACCAAAAAGAGTCAGGTGTTTTCAACAGCAGCTGACAACCAAACACAGGTGGGTATCAAGGTGCTGCAAGGTGAGAGGGAAATGGCTGCAGACAACAAAATGCTTGGAGAATTTGAGCTTGTCGGCATTCCTCCTGCTCCCAGGGGTTTGCCTCAGATTGAAGTTACCTTTGACATTGATGCCAACGGAATTGTTACTGTCTCTGCCAAAGACAAGGCAACCGGTAAAGAACAACAAATCACAATCCGATCATCTGGTGGGCTCTCAGAAGATGAGATTGAGAAGATGGTCAAAGAAGCAGAGTTACATGCACAGAGAGACCAAGAAAGGAAGGCTCTTATTGACATCAGAAACAGTGCAGATACTACCATCTACAGCATTGAGAAGAGCTTGGGTGAATACAGGGACAAGATTCCCAGCGAAGTGGCCAAAGAAATCGAGGATGCTATTTCAGATTTGAGAACGGCCATGTCTGGGGATAACGCTGAGGAAATTAAGGCAAAGCTTGATGCTGCAAACAAGGCTGTCTCCAAGATTGGGCAGCACATGTCAGGTGGTGGCTCAAGTGGTGGTTCCTCAACTGGGGGGTCTCAAGGTGGTGACCAGGCTCCCGAGGCAGAATATGAGGAGGTGAAGAAGTGA 2034 0.4621 MAAAAVLRSLRRRDVASASVSAFRSLSGSTKPAYVAHKWSSLCRPFSSRPAGNDVIGIDLGTTNSCVAVMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTDSIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQEVVSAIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKMLGEFELVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDQERKALIDIRNSADTTIYSIEKSLGEYRDKIPSEVAKEIEDAISDLRTAMSGDNAEEIKAKLDAANKAVSKIGQHMSGGGSSGGSSTGGSQGGDQAPEAEYEEVKK* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0455 677 Gene3D Actin; Chain A, domain 4 274 361 - -
Amo20g0455 677 SUPERFAMILY Actin-like ATPase domain 55 235 IPR043129 -
Amo20g0455 677 MobiDBLite consensus disorder prediction 646 664 - -
Amo20g0455 677 CDD HSPA9-like_NBD 52 427 - -
Amo20g0455 677 Hamap Chaperone protein DnaK [dnaK]. 52 675 IPR012725 GO:0005524|GO:0006457|GO:0051082
Amo20g0455 677 ProSitePatterns Heat shock hsp70 proteins family signature 3. 382 396 IPR018181 -
Amo20g0455 677 Coils Coil 297 324 - -
Amo20g0455 677 MobiDBLite consensus disorder prediction 641 677 - -
Amo20g0455 677 Gene3D - 231 411 - -
Amo20g0455 677 Pfam Hsp70 protein 55 647 IPR013126 GO:0005524|GO:0140662
Amo20g0455 677 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 427 551 IPR029047 -
Amo20g0455 677 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 34 660 - -
Amo20g0455 677 PANTHER HEAT SHOCK PROTEIN 70KDA 34 660 IPR013126 GO:0005524|GO:0140662
Amo20g0455 677 ProSitePatterns Heat shock hsp70 proteins family signature 1. 58 65 IPR018181 -
Amo20g0455 677 Gene3D - 552 649 IPR029048 -
Amo20g0455 677 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 579 651 IPR029048 -
Amo20g0455 677 TIGRFAM prok_dnaK: chaperone protein DnaK 55 647 IPR012725 GO:0005524|GO:0006457|GO:0051082
Amo20g0455 677 ProSitePatterns Heat shock hsp70 proteins family signature 2. 241 254 IPR018181 -
Amo20g0455 677 Gene3D - 56 424 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 54 67 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 82 94 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 105 113 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 189 209 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 247 257 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 379 395 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 410 430 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 433 452 - -
Amo20g0455 677 PRINTS 70kDa heat shock protein signature 514 530 - -
Amo20g0455 677 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 429 585 IPR029047 -
Amo20g0455 677 SUPERFAMILY Actin-like ATPase domain 236 427 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0455 Amo-Chr20 5644979 5648398 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0455 55 655 Miscellaneous Gene Families AT5G42020 51.118 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0455 K04043 - gmx:100804559 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0455 20 5644979 5648398 Amo20g0455 20 5644979 5648398 ECH