Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0451 ATGGCTTCCGCCGTCCTAGCCAACCGAAACGAACCTAATTGGCCGCAGCATAGAGGCGGTGTAGCTGGATTCATGGGGAAAGTACCATTTTCTAACCCTAACCCTAATTCAAAATTTGGTAATAAAAAGAATCAATCGGCGTTAGATGATGCTTCCTCCATCAATCGGAGGTCCAACGATGGCAACCATTACCAATATGTCACGTTCAACGTGGCGTCGTACTCAAAGAAGGAACTGAACGAGCTCAAGAATCGCTTGATCTTGGAGCTCGAGCAGATTCGAAAGCTCAAGAGTCGAATCGAGAATGGAGAATTTCAACCCAAGCAGAGCTTCAATGGCCCTCCCAAAAAATCGTCGACCAAGAAGATCTCTGGCAACAAACGGCCATTTCCGTTGGTGAATTCCATCACCAAAGATTTGAAACGATCGAATTCAGAGATTGGAAACTTGATGAAGTCCTGCTCGCAGGTTCTACAGAAGATCATGAAGCACAAGGTTGGGTGGATCTTCAACGCCCCCGTTGATGTCGTTGGAATGGGTCTTCACGATTACTATGATATAGTGAAGAAGCCCATGGATCTGGGCACCGTAAAGTCCAATCTCGCGAAGAATGTGTACTCTACGCCGTCGGATTTTGCTGCCGATGTGCGATTGACGTTTAAAAATGCGCTGACGTATAATCCCCCTGGTCACGATGTGCACAACATGGCTGACCTGCTTTTAACCAAGTTTGAAGAGCTGTATCGTCCTGTGCATGAGAAATTCGAGGATTCGATAAGGCAGCAGGATCAGGATGTTGATGAGGAATTGCAGGCCAGTTCATGGAATCATGTGGAACCGGAGAGGGTTGAGAGGGTTAAGAACAAGAAGGAGAATGTGATCCCTCCGGCAAGGTTTCAACCCGAGCCAGTGCAGGCCCCTGCGAGCTCTTCGAACCCTCCAATGGTGCAGTCGCCTGTGCGCACCCCTTCCCCTATGAGAGCCCAGCCGGTGAAGCCTCTGAAGCAGCCAAAGCCTAAGGCGAAGGACCCCAATAAGAGGGAGATGAGCCTTGAGGAGAAACACAAGTTGGGTATTGGGCTGCAGAGTTTGCCTCCTGAGAAAATGGAGCAGGTGGTACAGATCATAAGGAAGAGGAATGGGAACCTTAAGCAGGATGGGGATGAGATTGAGCTTGATATTGAGGCTGTTGACACTGAGACCCTTTGGGAACTTGATCGATTGGTGACAAATTGGAAGAAGATGATGAGCAAAATTAAGCGGCAGGCACTACTTGGCAACTTGAACAACAACAATGTCGCATCCAATAAATCCAATGGGGAATTGGCTATTGGTGAGAAGGTTGAGGCGGCTCCGGCTGAGGTGAAGAAACCAAAGAAAATGGATGCTGGGGATGAGGATATTGACATTGGGGATGAGATGCCGATGAGTACCTTCCCCCCTGTGGAGATTGAGAAAGATAAAGAAGTCGCCGGCGGCCATGCTAGTAGTAGTTCTAGTAGCTCCAGCAGTTCAAGTAGTGATTCCTCGTCATCTAGTGATTCAGATTCAGCGAGTTCCTCAAGGAGTGATTCTGAAGCAGACAATGGTCACTTGTAG 1599 0.4841 MASAVLANRNEPNWPQHRGGVAGFMGKVPFSNPNPNSKFGNKKNQSALDDASSINRRSNDGNHYQYVTFNVASYSKKELNELKNRLILELEQIRKLKSRIENGEFQPKQSFNGPPKKSSTKKISGNKRPFPLVNSITKDLKRSNSEIGNLMKSCSQVLQKIMKHKVGWIFNAPVDVVGMGLHDYYDIVKKPMDLGTVKSNLAKNVYSTPSDFAADVRLTFKNALTYNPPGHDVHNMADLLLTKFEELYRPVHEKFEDSIRQQDQDVDEELQASSWNHVEPERVERVKNKKENVIPPARFQPEPVQAPASSSNPPMVQSPVRTPSPMRAQPVKPLKQPKPKAKDPNKREMSLEEKHKLGIGLQSLPPEKMEQVVQIIRKRNGNLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKIKRQALLGNLNNNNVASNKSNGELAIGEKVEAAPAEVKKPKKMDAGDEDIDIGDEMPMSTFPPVEIEKDKEVAGGHASSSSSSSSSSSSDSSSSSDSDSASSSRSDSEADNGHL* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0451 532 MobiDBLite consensus disorder prediction 25 59 - -
Amo20g0451 532 Pfam Bromodomain 154 238 IPR001487 GO:0005515
Amo20g0451 532 ProSiteProfiles Bromodomain profile. 162 234 IPR001487 GO:0005515
Amo20g0451 532 Gene3D - 114 270 IPR036427 GO:0005515
Amo20g0451 532 MobiDBLite consensus disorder prediction 1 20 - -
Amo20g0451 532 CDD Bromo_plant1 150 248 IPR037377 -
Amo20g0451 532 MobiDBLite consensus disorder prediction 104 120 - -
Amo20g0451 532 MobiDBLite consensus disorder prediction 259 350 - -
Amo20g0451 532 PRINTS Bromodomain signature 165 178 IPR001487 GO:0005515
Amo20g0451 532 PRINTS Bromodomain signature 181 197 IPR001487 GO:0005515
Amo20g0451 532 PRINTS Bromodomain signature 197 215 IPR001487 GO:0005515
Amo20g0451 532 PRINTS Bromodomain signature 215 234 IPR001487 GO:0005515
Amo20g0451 532 PANTHER TRANSCRIPTION FACTOR GTE2 41 528 - -
Amo20g0451 532 MobiDBLite consensus disorder prediction 104 128 - -
Amo20g0451 532 SMART bromo_6 143 253 IPR001487 GO:0005515
Amo20g0451 532 Coils Coil 76 99 - -
Amo20g0451 532 ProSiteProfiles NET domain profile. 339 420 IPR027353 -
Amo20g0451 532 MobiDBLite consensus disorder prediction 336 350 - -
Amo20g0451 532 MobiDBLite consensus disorder prediction 259 292 - -
Amo20g0451 532 Gene3D - 342 419 IPR038336 -
Amo20g0451 532 PANTHER OSJNBA0053K19.4 PROTEIN 41 528 - -
Amo20g0451 532 MobiDBLite consensus disorder prediction 30 59 - -
Amo20g0451 532 MobiDBLite consensus disorder prediction 453 532 - -
Amo20g0451 532 Pfam Bromodomain extra-terminal - transcription regulation 348 410 IPR027353 -
Amo20g0451 532 SUPERFAMILY Bromodomain 145 255 IPR036427 GO:0005515
Amo20g0451 532 MobiDBLite consensus disorder prediction 493 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0451 Amo-Chr20 5602187 5605129 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0451 - - adu:107468545 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0451 20 5602187 5605129 Amo20g0451 20 5602187 5605129 ECH