Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4483 ATGGCGTTCTCTTCTTCTATGATTAACAGCTTCATCCTCTCTTCCTTTAAACCCCAACAATCCATCCTCTCTTTTCCCTCCATCTCGTATGGCGATTCCTTCAAACCTCGAAAGCCTCTTCTTCCCTTCAGAATCCGCTCTGTTCCAACCTTAATAAGAGCCACTTCATCCTCTTCTTTTCCCGCAACCATTGCTGAACCTGAAGGCATTAAGATTAATTCAATTCCATCCAAACCTATCAAAGGACAAAAGACTGGTACCAGTGGACTTCGAAAGAAGGTGAAAGTGTTTATGCAAGAAAATTACCTCGCAAACTGGATACAGGCACTGTTTAATTCATTGCCTCCAGAGGATTACAAGAATGGTGTATTGGTGTTGGGAGGTGATGGTCGATACTTCAACCGGGAAGCTGCGCAGATTATAATCAAAATTGCTGCCGGGAATGGTGTTGGAAAAATTTTGGTTGGACAGGAAGGTATATTGTCAACACCAGCTGTTTCTGCTGTGATAAGGAAGCAGAAGGCAAATGGTGGATTTATTATGAGTGCTAGCCATAATCCTGGAGGGCCGGAATATGATTGGGGTATTAAGTTTAATTACAGTAGTGGACAACCTGCTCCGGAATCCATCACTGACAAGATTTATGGAAACACACTATCTATATCTGAGATAAAGATCGCTGATATTCCTGATGTTGACTTATCAAAAACTGGGGTTACAAAGTTTGGAAGCTTCAGTGTTGAAGTAATAGACCCTGTTTCTGACTATTTGGAGCTACTGGAGAGTGTATTTGATTTTCAGCTAATAAGAAGTCTTATATCAAGGCCAGATTTTAGGTTTACATTTGATGCAATGCATGCAGTTACTGGCGCTTATGCCAAACCTATGTTTGTTGATAAACTTGGTGCAAGTCCGGATTCAATCGCAAATGGAATCCCTTTGGAAGATTTTGGACATGGTCATCCTGATCCTAATCTAACATATGCAAAGGATCTTGTCAACATTTTGTATGCTGAAAATGGTCCTGATTTTGGAGCTGCTAGTGATGGTGATGGTGATAGAAATATGATTTTAGGAAGACGTTTCTTCGTAACTCCTTCAGATTCTGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCAATTCCATACTTCAAGGATGGTGTTAAGGGTCTTGCTAGATCAATGCCAACAAGTGGTGCTCTAGATCGTGTTGCAGAGAAATTGAACCTTCCCTTTTTTGAGGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAAGTTATCAGTTTGCGGGGAAGAGAGTTTTGGAACAGGCTCTGACCACATTCGTGAGAAGGATGGCATCTGGGCTGTTTTAGCTTGGCTTTCTATTATTGCGCACCGCAACAAAGACAAGAAGGCAGGGGAGAAACTGATCTCTGTGGCTGATGTTGTGAAGGAACACTGGGCAACTTATGGAAGAAATTTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGTGCCAATAAGATGGTAGCATACCTACGAGAGACTGCATCAAAGAGCAAGACTGGTGATAAGTATGGAAGCTATGTCCTCCAATTTGCAGATGACTTCACATACACTGATCCTGTAGACGGAAGCGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTAGCGATGGCTCGAGGATTATATATCGTTTATCAGGAACTGGTTCTGCAGGTGCAACTGTTAGAGTTTACATTGAACAGTTTGAACCTGATGCCTCCAAACATGACCTTGATGCTCAAGTTGCCTTAAAACCATTAATAGATTTAGCACTATCTCTGTCAAAGCTCAAAGACTTCACAGGAAGGGAGAAGCCTACAGTGATCACATAA 1881 0.4168 MAFSSSMINSFILSSFKPQQSILSFPSISYGDSFKPRKPLLPFRIRSVPTLIRATSSSSFPATIAEPEGIKINSIPSKPIKGQKTGTSGLRKKVKVFMQENYLANWIQALFNSLPPEDYKNGVLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGQEGILSTPAVSAVIRKQKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVDLSKTGVTKFGSFSVEVIDPVSDYLELLESVFDFQLIRSLISRPDFRFTFDAMHAVTGAYAKPMFVDKLGASPDSIANGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRRFFVTPSDSVAVIAANAREAIPYFKDGVKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKAGEKLISVADVVKEHWATYGRNFFSRYDYEECESEGANKMVAYLRETASKSKTGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFSDGSRIIYRLSGTGSAGATVRVYIEQFEPDASKHDLDAQVALKPLIDLALSLSKLKDFTGREKPTVIT* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4483 626 Gene3D - 71 259 - -
Amo19g4483 626 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 178 187 IPR016066 GO:0000287
Amo19g4483 626 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 83 222 IPR005844 GO:0005975|GO:0016868
Amo19g4483 626 Gene3D - 363 461 - -
Amo19g4483 626 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 366 489 IPR005846 GO:0005975|GO:0016868
Amo19g4483 626 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 51 626 IPR045244 GO:0004614|GO:0005975
Amo19g4483 626 SUPERFAMILY Phosphoglucomutase, C-terminal domain 491 626 IPR036900 GO:0016868|GO:0071704
Amo19g4483 626 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 255 358 IPR005845 GO:0005975
Amo19g4483 626 Gene3D - 260 362 - -
Amo19g4483 626 SUPERFAMILY Phosphoglucomutase, first 3 domains 254 363 IPR016055 GO:0005975|GO:0016868
Amo19g4483 626 SUPERFAMILY Phosphoglucomutase, first 3 domains 73 284 IPR016055 GO:0005975|GO:0016868
Amo19g4483 626 PRINTS Phosphoglucomutase/phosphomannomutase family signature 177 191 IPR005841 GO:0005975|GO:0016868
Amo19g4483 626 PRINTS Phosphoglucomutase/phosphomannomutase family signature 277 296 IPR005841 GO:0005975|GO:0016868
Amo19g4483 626 PRINTS Phosphoglucomutase/phosphomannomutase family signature 313 326 IPR005841 GO:0005975|GO:0016868
Amo19g4483 626 PRINTS Phosphoglucomutase/phosphomannomutase family signature 342 357 IPR005841 GO:0005975|GO:0016868
Amo19g4483 626 CDD PGM1 75 626 - -
Amo19g4483 626 Gene3D - 472 626 - -
Amo19g4483 626 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 549 601 IPR005843 GO:0016868|GO:0071704
Amo19g4483 626 PANTHER PHOSPHOGLUCOMUTASE, CHLOROPLASTIC 51 626 - -
Amo19g4483 626 SUPERFAMILY Phosphoglucomutase, first 3 domains 350 496 IPR016055 GO:0005975|GO:0016868
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4483 Amo-Chr19 161862157 161868228 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4483 K01835 - gmx:100802730 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4483 19 161862157 161868228 Amo19g4483 19 161862157 161868228 ECH