Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4466 ATGTGTCAGCAAAGTGAGTACCTTGGTGGCTCAGACAGCAACATGCTGAGGGAAACATTGTTGATCCAAAATGAAACACAAGAAGAAGAAGAAGAAAAGTGTCTAACAAGACATGAGAGTGAAGATGCCATGAGAGAAGTAATCTCCATATCCAAAATAGCATTCCCAATGATTCTCACCGGTCTATTGCTCTACTGCCGCTCCATGATCTCCATGCTCTTCCTCGGCCGCCTGGGCGAACTCGCCTTAGCCGGCGGCTCCCTCGCACTAGGCTTCGCCAACATAACCGGCTACTCTGTCCTCTCCGGCCTGGCCGTGGGCATGGAACCCATTTGCGGACAGGCCTTTGGCGCCAAAAAGTTCACCCTGCTGGGCCTATGCTTACAAAGAACCATTCTCTTGCTTCTCTTCACCTCCATCCCCATAACACTGCTCTGGCTCCACGTGAAGCAAATCCTTCTCTTGTGTAACCAGGATGAGGACATAGCAACGCAAGCGCAGTCATTTCTTGTGTATTCCATCCCTGACCTCATTGCACAGTCTTTTCTACACCCTTTGAGAATTTACCTTAGAACCCAATCCATTACTCTGCCTCTTACCCTCTGCGCCGCCTTCTCTATTCTCCTCCACATACCAATCAACTATCTCCTTGTTTCTCACCTCAATCTTGGAATCAAAGGCGTGGCCTTAAGTGGGGTGTGGACAAATTTCAACCTTGTTGCTTCCTTGATCCTCTACATAGTTTTCTCTGGCACGCACAACAAAACATGGGGGGGTTTCACTTTCGAGTGTTTCACACAGTGGAGAAACCTCTTGAACCTTGCAATTCCAAGCTGCATTTCCGTGTGCCTGGAATGGTGGTGGTATGAGATCATGATCCTTCTCTGCGGTTTGCTGGTGAATCCAAGAGCAACAGTGGCTTCAATGGGAATCCTGATTCAAACGACTTCCCTTCTCTACATTTTCCCATCATCATTGAGCTTCAGTGTGTCAACAAGAGTGGGTAACAAGCTCGGTGAACAACAACCCTCAAAAGCAAAGCTTTCTGCAATTGTGGGCCTCATTTGCAGCATAATGTTGGGACTCACAGCTTTGGTGTTTTCTGTGATGGTTAGGAATATATGGGCCACCATGTTCACAGAGGACCAAGAGATTATAGCATTAACGTCAATGGTGTTACCCATCATAGGCCTTTGTGAACTCGGAAACTGTCCTCAAACAACGGGTTGTGGTGTTCTTAGAGGAACAGCAAGGCCTAAAGTGGGTGCACACATTAACTTGGGTTGCTTCTACCTTGTTGGAATGCCTGTGGCAATTTGGTTAGCTTTCTTTGCAGCTTTTGATTTCCAAGGCTTGTGGCTTGGCTTGCTCGCTGCTCAAGCTTCTTGTGCTCTTACAATGTTGCTCGTTTTGTATGCAACTGACTGGGAATTTCAGGCCCAAAGAGCTGAGAAGCTCACAGCAACTGATGCTGTTCTTCTTCATGATGATCCAGAGAACAAACTACCAAACCAAGATTCTTTATTGTCTTAA 1533 0.4697 MCQQSEYLGGSDSNMLRETLLIQNETQEEEEEKCLTRHESEDAMREVISISKIAFPMILTGLLLYCRSMISMLFLGRLGELALAGGSLALGFANITGYSVLSGLAVGMEPICGQAFGAKKFTLLGLCLQRTILLLLFTSIPITLLWLHVKQILLLCNQDEDIATQAQSFLVYSIPDLIAQSFLHPLRIYLRTQSITLPLTLCAAFSILLHIPINYLLVSHLNLGIKGVALSGVWTNFNLVASLILYIVFSGTHNKTWGGFTFECFTQWRNLLNLAIPSCISVCLEWWWYEIMILLCGLLVNPRATVASMGILIQTTSLLYIFPSSLSFSVSTRVGNKLGEQQPSKAKLSAIVGLICSIMLGLTALVFSVMVRNIWATMFTEDQEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKVGAHINLGCFYLVGMPVAIWLAFFAAFDFQGLWLGLLAAQASCALTMLLVLYATDWEFQAQRAEKLTATDAVLLHDDPENKLPNQDSLLS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4466 510 PANTHER PROTEIN DETOXIFICATION 32 494 - -
Amo19g4466 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 494 - -
Amo19g4466 510 CDD MATE_eukaryotic 46 482 IPR045069 GO:0042910|GO:1990961
Amo19g4466 510 Pfam MatE 56 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo19g4466 510 Pfam MatE 277 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo19g4466 510 TIGRFAM matE: MATE efflux family protein 56 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4466 Amo-Chr19 161621803 161623723 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4466 K03327 - gmx:100788027 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4466 19 161621803 161623723 Amo19g4466 19 161621803 161623723 ECH