Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4447 ATGGTTAAGATAACTATAGTTGGAAGGGCAAGGGATGGGTTACCCCTAGCACAAAGAGTGAGATATATGAATGAAGAGAATTGCTATGTTTCATGTTACAGGCAACAAGCTGAATTCATTCTCCAAGAAATTTCAAGAGGGGCTTTCATGGCTTCCAAGTTCACAATTCCAGTAGATCATTGCTCCTTCAATTGCTTGGTGGAGAATGGAGTTGTTTTCATTGTGTTATGTGACTCTTCATACCCAAGAAAACTGGCTTTCCATTACCTACAAGATCTACAAAAGGAGTTTGACAAGTTTAATAAAACTCTCATAGACAATATCACAAGGCCATACACCTTTGTCAAATTCGATGGTATAATTGCTAACTTTAGCAGACAATATATTGACACAAGAACTCAGGCCAACCTATCAAAACTCAATGCTAACAGGAAACAAGATTTAGATATTATTACTGAAGACATGTCCAATATCTTAGAAAGGAGGAGAAATTCAGAAACATTGGAAAGGTCACAAGTCACTCCTCAACCTGCATCTTCAATATGGTGTTCATCATGCTTAGAGGTAATTGCACTGAAATGGGTACCTATAATGATCACTGTTATCACTTCAATGACCCTTCTATGGGCTATTTTAGAATGTGAAGGCATAGCAAAAGAGTTTGAAAGCTATGCTCCTATCCTATGTATCCCCTATAATGTGCTGAATGAAACTTGTGCTAACATATTCAAATCTGAACTTCCTTCCAATTTATTGAAAGTCAATTGA 768 0.3685 MVKITIVGRARDGLPLAQRVRYMNEENCYVSCYRQQAEFILQEISRGAFMASKFTIPVDHCSFNCLVENGVVFIVLCDSSYPRKLAFHYLQDLQKEFDKFNKTLIDNITRPYTFVKFDGIIANFSRQYIDTRTQANLSKLNANRKQDLDIITEDMSNILERRRNSETLERSQVTPQPASSIWCSSCLEVIALKWVPIMITVITSMTLLWAILECEGIAKEFESYAPILCIPYNVLNETCANIFKSELPSNLLKVN* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4447 255 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 212 - -
Amo19g4447 255 CDD Longin 5 128 IPR010908 -
Amo19g4447 255 SMART Longin_2 36 120 IPR010908 -
Amo19g4447 255 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Amo19g4447 255 Gene3D Longin domain 1 159 - -
Amo19g4447 255 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 212 IPR044565 GO:0005484|GO:0006888|GO:0006890
Amo19g4447 255 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Amo19g4447 255 SUPERFAMILY SNARE-like 1 128 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4447 Amo-Chr19 161457243 161459445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4447 51 168 Miscellaneous Gene Families AT3G54300 27.338 6.44e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4447 K08517 - gmx:100781527 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4447 19 161457243 161459445 Amo19g4447 19 161457243 161459445 ECH