Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4417 ATGCCTAGAAACAGAACAGCATGGTGCTATTCTTTCTTAGTTACACTATTAATCAAACTCAGCATTATTTCTTCTTTTTCTCATAAACTACCAACACCACCACCATTGCCAATTCTGCCACTCCCATCATATTCACAGTTAAAATGGCAACAAAGAGAGATCATAATGTTCCTCCACTTTGGAGTCAACACATTCACAGATAGAGAATGGGGAACAGGCCACGAAAACCCTACAGTATTCAACCCTTCTGGACTCAACACAAAACAATGGGCCAAGGTGGCAGCAGAGGCAGGAATCTCATTGATGATACTAACTGCAAAGCACCATGATGGATTCTGCCTCTGGCCTTCAAAGTACACTGACCATTCTGTCATTAACAGTCCCTGGAAATCTGGCAATGGTGATGTGGTTCAAGAATTTGTTGATGCTGCCACACTGCAAGGAATCGATGTAGGGATCTATCTTTCGCCGTGGGATCGACACGAGCCGCGCTACGGCCATGATGTTGCCTACAATGAATACTACTTGGCTCAACTGCAAGAGTTGCTCAACAAGTACAAAAATGTTAGAGAAATATGGTTTGATGGAGCAAAGGATCCAAAGTCACAGAATGTGTCATATTATTTCTCAGATTGGTTCTCAATGGTGAAGGAGTTGCAGAGTTCCATCAATATCTTCTCTGATGCTGGTCCTGATGTTAGGTGGGTGGGAGATGAAACAGGAAGTGCTGGCTACACTTGTTGGTCTACCATTAACCGAACTTCTCTATCAATTGGAGCCCCAAACATCTCTCAATACTTAAGCACTGGTGATCCAAGAGGAACAGACTGGCTACCAGCTGAATGTGATGTTTCAATTAGGCCAGGGTGGTTTTGGCACAAATCAGAATCACCAAAAAGGCTAAGTGAACTTCTTGACATTTATTACAATTCAGTGGGGAGGAACTGTGTGTTACTTCTAAATGTACCTCCAAATACAACTGGCCTTGTATCTGATGATGATGCTCATAGATTAAAAGAGTTTAGAATTGCAATTAACACAATCTTCAATAAAAATCTAGCTGAGGATTTTTACATTAAGGTTAGTAGTCAAAGGAGTGCAGAATTTGGGCCAGAAAAGTTGCTAGATAAGGACCACTTATGGTCATATTGGGCACCAAGTGCTGATGATGGTGAAAAGGATCACTGGATTGAAATTTGGACCAATGATGGAGGGTTGAGATTCAATGTGATTAGGGTGCAGGAAGCAATTGGACTTGGTCAGCGGATCCAACGGCACGAAATCTATGTGGATGGTAAATTGATGATCCAAGGGACAACTGTGGGATACAAGAGGCTTCATAGGCTTGATGTAGATGTGGTGCAAGCACGTCTTGTGAGGATTAAGATCACAAAGGCAAGAGGGTTGCCCTTAATTTCTTCTATTGGATTGCATTTTGATCCTTATTGGCATTCTAAGTTTACTGCCAACTGA 1473 0.4209 MPRNRTAWCYSFLVTLLIKLSIISSFSHKLPTPPPLPILPLPSYSQLKWQQREIIMFLHFGVNTFTDREWGTGHENPTVFNPSGLNTKQWAKVAAEAGISLMILTAKHHDGFCLWPSKYTDHSVINSPWKSGNGDVVQEFVDAATLQGIDVGIYLSPWDRHEPRYGHDVAYNEYYLAQLQELLNKYKNVREIWFDGAKDPKSQNVSYYFSDWFSMVKELQSSINIFSDAGPDVRWVGDETGSAGYTCWSTINRTSLSIGAPNISQYLSTGDPRGTDWLPAECDVSIRPGWFWHKSESPKRLSELLDIYYNSVGRNCVLLLNVPPNTTGLVSDDDAHRLKEFRIAINTIFNKNLAEDFYIKVSSQRSAEFGPEKLLDKDHLWSYWAPSADDGEKDHWIEIWTNDGGLRFNVIRVQEAIGLGQRIQRHEIYVDGKLMIQGTTVGYKRLHRLDVDVVQARLVRIKITKARGLPLISSIGLHFDPYWHSKFTAN* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4417 490 PRINTS Glycosyl hydrolase family 29 signature 303 324 IPR016286 GO:0004560|GO:0006004
Amo19g4417 490 PRINTS Glycosyl hydrolase family 29 signature 101 117 IPR016286 GO:0004560|GO:0006004
Amo19g4417 490 PRINTS Glycosyl hydrolase family 29 signature 149 168 IPR016286 GO:0004560|GO:0006004
Amo19g4417 490 Pfam Alpha-L-fucosidase 76 340 IPR000933 GO:0004560|GO:0005975
Amo19g4417 490 Gene3D Glycosidases 37 355 - -
Amo19g4417 490 Gene3D - 360 478 - -
Amo19g4417 490 PANTHER OS09G0520800 PROTEIN 25 487 - -
Amo19g4417 490 SMART alpha_l_fucos 39 380 IPR000933 GO:0004560|GO:0005975
Amo19g4417 490 SUPERFAMILY (Trans)glycosidases 35 342 IPR017853 -
Amo19g4417 490 SUPERFAMILY Galactose-binding domain-like 350 467 IPR008979 -
Amo19g4417 490 PANTHER ALPHA-L-FUCOSIDASE 25 487 IPR000933 GO:0004560|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4417 Amo-Chr19 161195838 161197971 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4417 K01206 - gmx:100775293 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4417 19 161195838 161197971 Amo19g4417 19 161195838 161197971 ECH