Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4264 ATGCCTCCAATGGCATCCTCTCTGTTATTACCACTCTCTGCACCCTCCTCCTTCATTGACGATTCCGCAGCTTCTTCTCTGCGCCCCTTTCTCCATGGAACCAAGCTCCTTCCTTCTCCCGCCAGGCCCAGACTGCCACGTGGCTGCACCTTCAAGTCTCCTTCTGCCAAGTCCTCTTCTTTCGACCACATCCCCAAGCAGTTCCGCCAGGAAAATCTCAAGGACGGATTGATGGATAACTACAAGAATGCACCTCAATCTCTATATGGCCTCAGTCCTTCACAAATGGATATGTTTATGACTGAAGATAATCCTATCCGCCAGCAGGCTGAAAGAGTTACAGAGGAAAGCATCTCATCTGCCAGAAATTATTTGGATCATGGTGGGATGTGGAGTCTATCTGACTTCGGTGATAAGGGCCCTTCAAAATACAGCATGAGTGTCAGTATGTACCGAGGAGGAGGTAGAGGAACCGGAAGGCCTAGAACTGCTCCACCGGATTTGCCGTCGTTGCTCTTGGATGCTCGGATATGCTATCTGGGTATGCCGATTGTACCAGCTGTCACAGAACTTCTTATTGCTCAGTTTATGTGGCTGGATTATGATAATCCGGCCAAACCTATATACTTGTATATCAATTCATCTGGGACTCAGAATGAGAAGAATGAGACTGTGGGATCTGAAACTGAGGCATATTCTATAGCTGATATGATGTCTTATGTCAAATCAGATGTCTATACTGTGAATTGTGGAATGGCATATGGTCAGGCAGCAATGCTTCTGTCGCTTGGAGCAAAGGGTTATCGCGCTGTACAGCCAAATTCATCTACAAAATTGCATCTACCAAAAGTCAACAGATCCAGTGGTGCTGTTATAGATATGTGGATTAAGGCAAAAGAACTGGAGGCAAATAGTGAGTCTTACATCGAGCTGTTGGCTAAAGGAACAGGGAAATCTAAGGAAGAAATTGCTAAAGATGTCCAGAGGCCTAAATATTTTCGGGCAGCGGAAGCTATTGAGTACGGTCTTGCTGACAAAATAATCGATTCGCAGGACATTGCTTTTGACAAACGGAATTATGATGAAATGCTTGCTCAATCACGAGCTATGAGAAGACAAGGTGGTGCTAACCCTCAAGTGTCTCCTTCGGGACTTGGGTAA 1161 0.4574 MPPMASSLLLPLSAPSSFIDDSAASSLRPFLHGTKLLPSPARPRLPRGCTFKSPSAKSSSFDHIPKQFRQENLKDGLMDNYKNAPQSLYGLSPSQMDMFMTEDNPIRQQAERVTEESISSARNYLDHGGMWSLSDFGDKGPSKYSMSVSMYRGGGRGTGRPRTAPPDLPSLLLDARICYLGMPIVPAVTELLIAQFMWLDYDNPAKPIYLYINSSGTQNEKNETVGSETEAYSIADMMSYVKSDVYTVNCGMAYGQAAMLLSLGAKGYRAVQPNSSTKLHLPKVNRSSGAVIDMWIKAKELEANSESYIELLAKGTGKSKEEIAKDVQRPKYFRAAEAIEYGLADKIIDSQDIAFDKRNYDEMLAQSRAMRRQGGANPQVSPSGLG* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4264 386 SUPERFAMILY ClpP/crotonase 162 352 IPR029045 -
Amo19g4264 386 Pfam Clp protease 170 350 IPR023562 -
Amo19g4264 386 Gene3D - 156 356 - -
Amo19g4264 386 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 53 375 IPR023562 -
Amo19g4264 386 PRINTS Clp protease catalytic subunit P signature 326 345 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo19g4264 386 PRINTS Clp protease catalytic subunit P signature 247 264 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo19g4264 386 PRINTS Clp protease catalytic subunit P signature 207 227 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo19g4264 386 PRINTS Clp protease catalytic subunit P signature 167 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo19g4264 386 PRINTS Clp protease catalytic subunit P signature 268 287 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo19g4264 386 CDD S14_ClpP_2 167 347 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo19g4264 386 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 53 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4264 Amo-Chr19 159327958 159330909 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4264 K01358 - jre:109014211 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4264 19 159327958 159330909 Amo19g4264 19 159327958 159330909 ECH