Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4259 ATGAAGAAGCTTCGGAGATCAACGCTGGCGCTGTTTTTAGGGTTTCTGTTGCTGTCGGTGGCGCCGTCGTCAATGGGGAGATTCGTGGTGGAGAAGAATAGCTTGACGGTGACTTCGCCGGAGAAAATCAAGGGGACCTACGACAGCGCCATTGGTAACTTTGGGATACCACAGTATGGTGGTAGTATGGCCGGGAGCGTCGTGTACCCGAAGGACAACCAAAAGGGTTGCAAGGAGTTCGATGAGTCTGGGATTTCCTTTAAATCCAAGCCCGGTGCTCTTCCCACCATCGTTTTGCTCGATCGTGGAAGTTGCTTTTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCGGATGATATTGATGAAAACTTGATAACTATGGACACACCTGAGGAGGATGGATCATCTGCAAAATACATAGAGAACATAACAATACCATCAGCTCTCATTGAAAAAAGTTTTGGTATAAAATTAAAGGATGCCATAAGTGGTGGTGATATGGTCAATGTAAATCTTGATTGGAGAGAGGCTGTTCCCCACCCAGATGACCGCGTGGAGTATGAGTTGTGGACCAACAGCAATGATGAGTGCGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCTGCACAGATACTTGAAAAAGGTGGTTATACTCAGTTTACACCCCACTATATAACTTGGTACTGTCCTCAGGCGTTCACATTAAGCAAACAGTGCAAGTCTCAGTGCATCAATCACGGAAGATATTGTGCTCCAGATCCTGAGCAGGACTTCAGCACTGGTTATGACGGGAAAGATGTGGTTATTGAAAACTTAAGGCAGCTTTGCGTTTTTAAGGTGGCAAATGAAACTAAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGTCCAATGAAGGAGAAAAAATACAATAAGGAGTGTGCTGATGCTGTCATTAAGTCACTTGGTCTTGATCTCAAAAGGATTGAAAAATGCATGGGAGATCCTGATGCTGATTCTGACAATCCTGTTTTGAAGGAAGAGCAAGATGCACAGGTTGGAAAGGGTTCCAGAGGTGATGTCACCATATTGCCGACTCTTGTTGTCAATAATCGACAGTATCGAGGAAAACTGGAAAAAGGGGCTGTCATGAAAGCTATATGCTCTGGGTTTGAAGAAACTACTGAACCAGCCGTCTGTTTGAGCAGTGATGTGGAGACAAATGAGTGTTTGGATAACAACGGTGGTTGTTGGCGGGATAAAGCAGCTAACATCACTGCATGCAAGGATACATTCCGCGGCCGAGTATGCGAATGCCCCCTCGTGGATGGCGTGCAGTTCAAAGGAGATGGTTATACAACCTGTGAAGCCAGTGGACCTGGGCGGTGCAAGATAAATAATGGGGGTTGTTGGCATGATGCCCGTAATGGACACGCGTTTTCTGCTTGTTTGGATGATGGACATGTTAAATGCCAGTGTCCTGCAGGGTTTAAGGGTGATGGTGTCAAAAACTGTGATGACATAGATGAATGCGGAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTACCTGCAAGAATACCTGGGGCAGCTATGACTGCAGTTGCAGTGGAGACCTTCTGTATATCAGGGACCATGATGCCTGCATAAGTAAAACTGCGAGTCAGGGAGGGAAATCTGCTTGGGCTGCATTTTGGGTCATTTTACTTGGCTTGGTTCTAGCTGCGGCTGGCGCATACCTAGTGTACAAATATAGAATAAGGTCATACATGGATTCTGAAATCAGAGCCATCATGGCACAGTACATGCCCCTGGACAGCCAAGGGGAAGTAGTAAACCATGTCAACGATGAAAGAGCATGA 1896 0.4583 MKKLRRSTLALFLGFLLLSVAPSSMGRFVVEKNSLTVTSPEKIKGTYDSAIGNFGIPQYGGSMAGSVVYPKDNQKGCKEFDESGISFKSKPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDIDENLITMDTPEEDGSSAKYIENITIPSALIEKSFGIKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKECADAVIKSLGLDLKRIEKCMGDPDADSDNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSDVETNECLDNNGGCWRDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHDARNGHAFSACLDDGHVKCQCPAGFKGDGVKNCDDIDECGEKKACQCPECTCKNTWGSYDCSCSGDLLYIRDHDACISKTASQGGKSAWAAFWVILLGLVLAAAGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQGEVVNHVNDERA* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4259 631 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 610 - -
Amo19g4259 631 SMART egfca_6 519 561 IPR001881 GO:0005509
Amo19g4259 631 Gene3D - 25 189 - -
Amo19g4259 631 Gene3D Laminin 473 553 - -
Amo19g4259 631 CDD PA_VSR 53 180 - -
Amo19g4259 631 SUPERFAMILY PA domain 60 159 IPR046450 -
Amo19g4259 631 ProSitePatterns EGF-like domain signature 2. 503 517 IPR000742 -
Amo19g4259 631 CDD EGF_CA 519 547 - -
Amo19g4259 631 Pfam Complement Clr-like EGF-like 501 522 IPR026823 -
Amo19g4259 631 Gene3D Laminin 412 468 - -
Amo19g4259 631 Pfam PA domain 64 164 IPR003137 -
Amo19g4259 631 ProSitePatterns Calcium-binding EGF-like domain signature. 519 545 IPR018097 GO:0005509
Amo19g4259 631 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 14 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4259 Amo-Chr19 159300611 159305298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4259 26 631 Miscellaneous Gene Families AT2G14740 85.644 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4259 - - gmx:100803958 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4259 19 159300611 159305298 Amo19g4259 19 159300611 159305298 ECH