Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4258 ATGAAGAATAAACTAGTATTGTTGTCATTATCTCTTTGCCTTTGTGTTGTGGTAGTTCCAATTAGGAGCCAAAAGCATGCATGTGACAAAGGCTTTTCTCAAAGAAGCAAATTCCCATTTTGTAACACTTCATTAACATATGAGATCAGAGCCAAAGACTTGGTTTCACGGCTAACACTTGAAGAAAAGGCAGAGCAATTAGTGAACCCTTCAAGCGGTGTGTCAAGGCTAGGTGTCCCTGCATATGAATGGTGGTCAGAGGCACTTCATGGTGTATCAAACTTGGGTCCAGGGACACGCTTTGACAAAAGGGTCCCTGGTGCCACAAGCTTCCCAGCAGTGATTCTATCAGCTGCAAGCTTCAATGCAACACTTTGGTACAACATGGGACAAGTTGTGTCCACTGAGGCCAGAGCCATGTACAATGTGGACTTGGCTGGCCTCACTTTCTGGAGTCCTAATGTCAATGTGTTTCGTGATCCAAGGTGGGGTCGCGGCCAAGAAACTCCCGGCGAGGACCCTCTTGTTGTGTCTAGATATGCTGTCAAGTATGTCCGGGGATTACAAGAAGTGCCTGATGAAGCTAGTTCCAAAGCTGATCGCCTTAAGGTCTCAAGTTGTTGTAAGCATTACACTGCTTATGATCTTGATAACTGGAAAGGCATTGATCGCTTCCATTTTGATGCTAAGGTGACAAAGCAAGACTTGGAGGACACGTATCAGCCTCCATTTAAGAGCTGTGTGGTGGAAGGTCATGTTAGCAGTGTCATGTGTTCTTACAATAGGGTCAATGGAGTTCCCACTTGTGCTGATCCAAACCTGCTCAAAGGGGTAGTAAGAGGTCAATGGGGTTTAGACGGATATATTGTTTCAGATTGTGATTCAATTGAAGTATATTATGATGCAATTCACTACACTGAAACACCTGAAGATGCTGTGGCTCTTGCACTGAAAGCAGGTTTAAATATGAATTGTGGGGACTTTCTAAAAAAATACACGCCAAATGCAGTGAAGTTGAAGAAGGTAGATGTATCTGTTGTAGACCAAGCACTGGTGTACAATTACATAGTTCTAATGAGATTAGGCTTCTTTGATGACCCCAAATCACTTCCATTTGCAAATCTTGGACCATCTGATGTATGCACTCAAGAGAATCAGCAATTAGCCTTAGATGCTGCAAAGCAAGGAATAGTTTTGCTTGAAAATAGTGGATCTCTTCCCTTATCAAAAACCAAGATAAAGAAACTGGCTGTGATTGGTCCAAATGCCAATGCAACCACAGTTATGATTAGCAACTATGCTGGAATACCTTGCCGCTACACTAGTCCATTGCAAGGAGTAGAGAAGTACATTTCTTCTGTGAGTTATGCACCTGGCTGCAGCAATGTTAAATGCAGCACTCAGAGCCTTTTCGGCGCAGCAACTAAGGCAGCATCAGGTGCTGATGCAGTTGTGGTGGTTGTGGGATTAGACCAGTCCATTGAAGCAGAAGGCCTTGACAGAGAGAACTTGACACTACCTGGATTTCAAGAGAAGCTTGTTAAGGATGTTGCTCAAGCTACAAAAGGAACATTGATTTTGGTGATCATGGCAGCTGGCCCAGTTGATATTTCTTTCACTAAGAGTGTCAGCAACATAGGAGGAATATTATGGGTTGGATATCCTGGTCAAGCTGGTGGAGATGCCATAGCTCAAGTAATATTTGGAGACTACAACCCAGGTGGTAGGTCCCCTTATACATGGTACCCAGAATCTTATGTTGATCAAGTACCAATGACTGACATGAACATGAGAGCCAATAGAAGCAGCAATTACCCTGGAAGAACCTACAGGTTCTACAATGGAAGCACTCTCTATGAATTCGGACATGGATTAAGTTACTCCACATTCACCACCTATGTAGCATCAGCTCCCAACACCATAGTGATCAAGAACTCATCATCCATTTATTCAAAACTTGAGTTCCTCACCGATGTTCAAGCAATTGATGTTTCCACCATAAGTTGCCTTGACTTAACATTCTTGCTTGTGATTGGTGTGAAGAACAATGGACCCTTTGATGGATCTCATGTGGTGCTAGTGTTTTGGAAGCCAGCAATGACTGAGCTTGTGCCTGGTGCTCCAATTATGCAGCTGATAGGATTTGAAAGGGTGCAAGTTAAGGTTGGGATGACAGAATTTGTAACGGTGAAAATAGATTTATGTGAAGAATTATCAGTAGTGGATGGTGATGGTAAGAGAAATCTGATCACTGGACAGAACACTATTGTGGTTGGTTCTTCCGGTGATAACCAAGTCACACATAACATTGATTTTAAGCTTTCAGAGATTGTGGATGGAGAACACTTCATGTCTCAGTGA 2361 0.4299 MKNKLVLLSLSLCLCVVVVPIRSQKHACDKGFSQRSKFPFCNTSLTYEIRAKDLVSRLTLEEKAEQLVNPSSGVSRLGVPAYEWWSEALHGVSNLGPGTRFDKRVPGATSFPAVILSAASFNATLWYNMGQVVSTEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVKYVRGLQEVPDEASSKADRLKVSSCCKHYTAYDLDNWKGIDRFHFDAKVTKQDLEDTYQPPFKSCVVEGHVSSVMCSYNRVNGVPTCADPNLLKGVVRGQWGLDGYIVSDCDSIEVYYDAIHYTETPEDAVALALKAGLNMNCGDFLKKYTPNAVKLKKVDVSVVDQALVYNYIVLMRLGFFDDPKSLPFANLGPSDVCTQENQQLALDAAKQGIVLLENSGSLPLSKTKIKKLAVIGPNANATTVMISNYAGIPCRYTSPLQGVEKYISSVSYAPGCSNVKCSTQSLFGAATKAASGADAVVVVVGLDQSIEAEGLDRENLTLPGFQEKLVKDVAQATKGTLILVIMAAGPVDISFTKSVSNIGGILWVGYPGQAGGDAIAQVIFGDYNPGGRSPYTWYPESYVDQVPMTDMNMRANRSSNYPGRTYRFYNGSTLYEFGHGLSYSTFTTYVASAPNTIVIKNSSSIYSKLEFLTDVQAIDVSTISCLDLTFLLVIGVKNNGPFDGSHVVLVFWKPAMTELVPGAPIMQLIGFERVQVKVGMTEFVTVKIDLCEELSVVDGDGKRNLITGQNTIVVGSSGDNQVTHNIDFKLSEIVDGEHFMSQ* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4258 786 Pfam Glycosyl hydrolase family 3 C-terminal domain 397 627 IPR002772 GO:0004553|GO:0005975
Amo19g4258 786 Gene3D Immunoglobulins 660 777 IPR013783 -
Amo19g4258 786 Gene3D - 50 371 IPR036962 GO:0004553|GO:0005975
Amo19g4258 786 Gene3D - 382 629 IPR036881 GO:0004553|GO:0005975
Amo19g4258 786 SUPERFAMILY (Trans)glycosidases 38 396 IPR017853 -
Amo19g4258 786 Pfam Fibronectin type III-like domain 690 761 IPR026891 -
Amo19g4258 786 PANTHER SUGAR HYDROLASE-RELATED 8 770 IPR044993 GO:0009044|GO:0045493
Amo19g4258 786 Pfam Glycosyl hydrolase family 3 N terminal domain 104 325 IPR001764 GO:0004553|GO:0005975
Amo19g4258 786 PRINTS Glycosyl hydrolase family 3 signature 204 220 IPR001764 GO:0004553|GO:0005975
Amo19g4258 786 PRINTS Glycosyl hydrolase family 3 signature 278 296 IPR001764 GO:0004553|GO:0005975
Amo19g4258 786 PRINTS Glycosyl hydrolase family 3 signature 111 130 IPR001764 GO:0004553|GO:0005975
Amo19g4258 786 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 397 630 IPR036881 GO:0004553|GO:0005975
Amo19g4258 786 SMART Fn3_like_2 690 762 IPR026891 -
Amo19g4258 786 PANTHER BETA-D-XYLOSIDASE 5-RELATED 8 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4258 Amo-Chr19 159292200 159294964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4258 4 775 Glycoside Hydrolase AT3G19620 68.252 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4258 K15920 - gmx:100817869 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4258 19 159292200 159294964 Amo19g4258 19 159292200 159294964 ECH