Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4248 ATGCAAATGTTGCAAACCCTAGCACCCGTAAGGGCAGCAAAACCCTGTTTCATGGTGAATACATCATTGGCATGGCTACGAAACTTGAAAGGGAGAGCGAGAGTGCGTGCATTCTCTTTCTCCTCCTCCGACGACGATTACGGAGACCAATCACGCGGTGGTCTCCCCCGTTTCTACTCCGAAACTTTTCCTTCTTCCAAGGGTAGTGTTGTGCGTGTAAAAGGTGATGAATTTTGGCATATGACAAAAGTATTGAGGCTGGGTGCCGATGACAGGGTAGAGCTCTTCAACGGGAAGGGAGGTCTGGTAGAAGGATGCATACAGAACATTGATCGTACTGGACTTGATTTTGTTGCACTGAATGATCCAAAGCTAATACATCCACAGAACATGCAGTTTCATGTATTTGCTGGTTTTGGAACTTTGAAGGGTGGACGTGCTGACTGGCTTGTAGAGAAGTGCACAGAACTTGGAGCCAATAGTGTAACTCCACTACTTACTGAACGTTCTCCATCAATCTCAGAAAATCGGGTAGACAGATTGGAACGGGTAATCTTAGCGGCATCAAAACAATGTCAACGGCTGCATGAAATGGTCCTGAAACCTCCTGTAAAGGTTAATGACCTTCTCCATCTTATTGCACAGTCAAAGCTTTCTCTTGTTGCAACAGCAAAGGCATCTCCTGTTCTTAATGCATTGACAGAATTCGAAAAGGAAACTAGTGGCTTAATCGTAATTGGACCTGAAGGCGACTTCACCGAGAAAGAAGAGAGTATGATGATGGAAGCGGGTGCCATAGGTGTTAGTCTCGGGCCACATCGTCTAAGGGTTGAAACCGCCACAATAGCACTTCTATCAACTCTCATGTTATGGTCTGACTCTCACCGAAGCTAA 894 0.4575 MQMLQTLAPVRAAKPCFMVNTSLAWLRNLKGRARVRAFSFSSSDDDYGDQSRGGLPRFYSETFPSSKGSVVRVKGDEFWHMTKVLRLGADDRVELFNGKGGLVEGCIQNIDRTGLDFVALNDPKLIHPQNMQFHVFAGFGTLKGGRADWLVEKCTELGANSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKPPVKVNDLLHLIAQSKLSLVATAKASPVLNALTEFEKETSGLIVIGPEGDFTEKEESMMMEAGAIGVSLGPHRLRVETATIALLSTLMLWSDSHRS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4248 297 CDD RsmE-like 139 286 IPR046886 -
Amo19g4248 297 SUPERFAMILY alpha/beta knot 131 292 IPR029028 -
Amo19g4248 297 Gene3D - 54 296 IPR029026 -
Amo19g4248 297 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 55 296 IPR006700 GO:0006364|GO:0008168
Amo19g4248 297 SUPERFAMILY PUA domain-like 58 117 IPR015947 -
Amo19g4248 297 Pfam RNA methyltransferase domain 132 288 IPR046886 -
Amo19g4248 297 Pfam RNA methyltransferase PUA domain 74 118 IPR046887 -
Amo19g4248 297 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 69 289 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4248 K09761 - gmx:100777253 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4248 19 159209483 159212307 Amo19g4248 19 159209483 159212307 ECH