Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4247 ATGGACTGGATGCAGTTTGGACCATCTTCTTATGGTCAAGTGCAAACTAATTTTAGCTCTGCTAGCCAATTCCACCCTGCTTCTCAAATCCAAGCTCCCTCTAGTTCTTCTTCCCAGAGCATTACCTCTGATACAGTTGTTCTGAGCAATGACGAGAAACCTTCAACTACATCTGTCACGCCTTCAGCAACTGGCATCCAGCCTTCACTTGCGAATGGTGGATCCACAGATTGGATTGAGCATACTTCTTCTAATGGAGTAAGATATTACTACAATAAGAAGACTAAAGTATCTAGCTGGGAGAGGCCTTTCGAATTGATGACCCCAATTGAGAGGGTGGATGCAACAACAAACTGGAAGGAGTATACTAGTCCTAATGGAATAAAGTATTACCACAACAAGGTCACTAGGGAATCAAAGTGGATGATTCCTGAGGAACTGAAGTTGGCCCGTCAGCAAGTTGAAAAGGCAGTTGCCAATGGAACACATACTGATGCTCTACCGAATTCTCATACTCAACCGTCTGTAACTCCTCCTGTGATTGAAACAGCACCAACTGCAGCAGCTAATTCATCTTTGATTGGTCAAGGGGAACCATCAAGTCCTGTTTCAGTTGCTCCTGTTGTTAGTGCATCTACAAGTCATCCACAATCTGAGATGAGTTCTGGACCATCTGCCTCTCCTCATGTGGCTCCCATAACTGGAATGACAGTGGCTGAAGTAGAGTTACCAGTAAATACTGCTACAATATCTGATGCTGCAGCAGGAAGTGATAGAGCTTCTGTTACCAATCAGAATGATGGCAACAACTTTCTGGTGAAGGATACACTGGGCTCTGCAGATGAAGTTCCAGCAGAAGATAAAGAAGATGGTAAAAATGATTCGTTAGTAGAAAAAACAAATGATGTGGCTTCAGAAACAAAGGCAGATACGGTTTCAGAAACAAGGGCTGATTTGGCTTCAGAAACACAGGCAAATGTGGCTTTGGAAACAAAGGCAGATGCATCTTCAGAAACAAAAACACGTGAACCATTACCCTTAGTTTATGCAAATAAGATGGAGGCTAAAGAAGCATTCAAAGCACTGATAGAGTCTGTAAATGTTGGATCTGACTGGACATGGGATCGAACTATGCGATTAATAGTTAATGACAAAAGGTACGGTGCATTAAAATCGCTTGGAGAAAAGAAGCAAGCTTTCAATGAGTACTTAAGTCACAGGAAAAAACAGGAAGCGGAAGAAAAGCGCATGAAGCATAAAAAAGCACGAGAGGATTTTAAAAAGATGTTAGAAGAGTCCACGGAGTTGAATCCATCCACTAGATGGAGCAAAGCCGTGACAATATTTGAAAATGATGAACGTTTCAAGGCTGTTGAGCGTGACAGAGATCGCAGGGATATGTTTGATAGTTTCTTGGAGGAACTTATAAACAAGGAACGAGCAAAGGCTCAAGAAGAACGGAAGAGGAATATAACAGAGTACAGGAAGCTTTTAGAATCTTGTGACTTTATAAAAGCTAACACACAGTGGCGAAAAGTTCAAGACCGCTTAGAGGCTGACGAAAGATGTTCGCGTCTTGAGAAAATTGACCGCTTGGAAATATTCCAGGACTATTTACGTGATTTAGAGAAGGAAGAGGAAGAGCAGAAGAAGTTACTAAAGGAGGAATTGAGAAAGACAGAACGTAAAAACCGTGATGAATTCCGCAAATTGATGGAAGAGCATGTTGCTGCTGGCATTCTTACAGCAAAAACTCATTGGCGTGATTATCACATGAAGGTGAAAGATTTACCTGCATATCTGGCAGTGGCATCAAACACATCAGGTTCAACTGCAAAAGACTTATTTGAAGATGTTGCTGAAGAGCTAGAGAAACAATATCATGATGAAAAGAGTCGAATTAAGGATGCAGTGAAGTTGGCTAAGATAACATGGTCATCAACCTATACTTTTGAAGAGTTCAAATCAGCTTTATCTATTGACTCTCCTCCAATATCTGATTTTAACTTAAAGCTAGTGTTTGATGAGCTACTAGAGCGGGCTAAGGAGAAGGAAGAAAAGGAGGCCAAAAAACGGAAACGTCTAGCAGATGATTTCCTTCATTTACTATATTCTACTAAGGACATTACTGCATCTTCAAAATGGGAAGATTGTATAACACTTATTGAAGATAGTCAAGAGTTCAGATCTGTTGGAGATGATAACCGTTGCAAGGAAATATTTGAGGAGTACATTACACAACTGAAAGAACAGGCAAAAGAGGGTGAGCGGAAACGGAAAGAGGAGAGGCATCAAAGTCCTGAGCACACTTCTCATGAATTGGATAAAGAGAGGAGTAAGAAATCTCATGGGCATAGTAGCAGCGACAGGAAGAAATCGAAACGACATTCATCTGGTCATGAATCAGATGAAGGCCGGCATAAAAGACACAAGCGCGACCACCGCGGTGATCCTCACAGAGAAGGTGGTTATGCGGAGGCGGAAGACGATGACTATGGTAAAGATGTTGATAGATGGTAA 2520 0.4159 MDWMQFGPSSYGQVQTNFSSASQFHPASQIQAPSSSSSQSITSDTVVLSNDEKPSTTSVTPSATGIQPSLANGGSTDWIEHTSSNGVRYYYNKKTKVSSWERPFELMTPIERVDATTNWKEYTSPNGIKYYHNKVTRESKWMIPEELKLARQQVEKAVANGTHTDALPNSHTQPSVTPPVIETAPTAAANSSLIGQGEPSSPVSVAPVVSASTSHPQSEMSSGPSASPHVAPITGMTVAEVELPVNTATISDAAAGSDRASVTNQNDGNNFLVKDTLGSADEVPAEDKEDGKNDSLVEKTNDVASETKADTVSETRADLASETQANVALETKADASSETKTREPLPLVYANKMEAKEAFKALIESVNVGSDWTWDRTMRLIVNDKRYGALKSLGEKKQAFNEYLSHRKKQEAEEKRMKHKKAREDFKKMLEESTELNPSTRWSKAVTIFENDERFKAVERDRDRRDMFDSFLEELINKERAKAQEERKRNITEYRKLLESCDFIKANTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKLLKEELRKTERKNRDEFRKLMEEHVAAGILTAKTHWRDYHMKVKDLPAYLAVASNTSGSTAKDLFEDVAEELEKQYHDEKSRIKDAVKLAKITWSSTYTFEEFKSALSIDSPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLADDFLHLLYSTKDITASSKWEDCITLIEDSQEFRSVGDDNRCKEIFEEYITQLKEQAKEGERKRKEERHQSPEHTSHELDKERSKKSHGHSSSDRKKSKRHSSGHESDEGRHKRHKRDHRGDPHREGGYAEAEDDDYGKDVDRW* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4247 839 SMART ww_5 73 105 IPR001202 GO:0005515
Amo19g4247 839 SMART ww_5 114 146 IPR001202 GO:0005515
Amo19g4247 839 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 5 766 - -
Amo19g4247 839 Gene3D - 113 170 - -
Amo19g4247 839 Gene3D - 60 112 - -
Amo19g4247 839 SUPERFAMILY FF domain 479 548 IPR036517 -
Amo19g4247 839 ProSiteProfiles FF domain profile. 418 474 IPR002713 -
Amo19g4247 839 Coils Coil 674 698 - -
Amo19g4247 839 SUPERFAMILY FF domain 413 480 IPR036517 -
Amo19g4247 839 ProSiteProfiles FF domain profile. 487 541 IPR002713 -
Amo19g4247 839 MobiDBLite consensus disorder prediction 751 784 - -
Amo19g4247 839 Gene3D FF domain 685 759 IPR036517 -
Amo19g4247 839 Pfam WW domain 77 103 IPR001202 GO:0005515
Amo19g4247 839 Pfam WW domain 118 142 IPR001202 GO:0005515
Amo19g4247 839 MobiDBLite consensus disorder prediction 254 341 - -
Amo19g4247 839 CDD WW 76 103 IPR001202 GO:0005515
Amo19g4247 839 CDD WW 117 146 IPR001202 GO:0005515
Amo19g4247 839 SUPERFAMILY WW domain 77 111 IPR036020 GO:0005515
Amo19g4247 839 MobiDBLite consensus disorder prediction 191 231 - -
Amo19g4247 839 Pfam FF domain 697 744 IPR002713 -
Amo19g4247 839 Pfam FF domain 354 403 IPR002713 -
Amo19g4247 839 Pfam FF domain 491 538 IPR002713 -
Amo19g4247 839 Pfam FF domain 421 469 IPR002713 -
Amo19g4247 839 Pfam FF domain 563 618 IPR002713 -
Amo19g4247 839 MobiDBLite consensus disorder prediction 280 315 - -
Amo19g4247 839 SUPERFAMILY FF domain 349 406 IPR036517 -
Amo19g4247 839 MobiDBLite consensus disorder prediction 191 228 - -
Amo19g4247 839 MobiDBLite consensus disorder prediction 316 334 - -
Amo19g4247 839 SMART FF_2 419 474 IPR002713 -
Amo19g4247 839 SMART FF_2 561 622 IPR002713 -
Amo19g4247 839 SMART FF_2 352 406 IPR002713 -
Amo19g4247 839 SMART FF_2 692 747 IPR002713 -
Amo19g4247 839 SMART FF_2 487 541 IPR002713 -
Amo19g4247 839 MobiDBLite consensus disorder prediction 254 273 - -
Amo19g4247 839 MobiDBLite consensus disorder prediction 794 839 - -
Amo19g4247 839 Gene3D FF domain 352 407 IPR036517 -
Amo19g4247 839 MobiDBLite consensus disorder prediction 22 77 - -
Amo19g4247 839 Coils Coil 532 574 - -
Amo19g4247 839 SUPERFAMILY FF domain 554 629 IPR036517 -
Amo19g4247 839 ProSiteProfiles WW/rsp5/WWP domain profile. 113 146 IPR001202 GO:0005515
Amo19g4247 839 ProSiteProfiles WW/rsp5/WWP domain profile. 72 105 IPR001202 GO:0005515
Amo19g4247 839 Coils Coil 738 765 - -
Amo19g4247 839 ProSiteProfiles FF domain profile. 559 622 IPR002713 -
Amo19g4247 839 MobiDBLite consensus disorder prediction 751 839 - -
Amo19g4247 839 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 5 766 IPR039726 GO:0045292
Amo19g4247 839 SUPERFAMILY WW domain 106 147 IPR036020 GO:0005515
Amo19g4247 839 ProSitePatterns WW/rsp5/WWP domain signature. 78 103 IPR001202 GO:0005515
Amo19g4247 839 Coils Coil 613 640 - -
Amo19g4247 839 SUPERFAMILY FF domain 685 754 IPR036517 -
Amo19g4247 839 Coils Coil 409 432 - -
Amo19g4247 839 Gene3D FF domain 408 480 IPR036517 -
Amo19g4247 839 Gene3D FF domain 481 550 IPR036517 -
Amo19g4247 839 Gene3D FF domain 551 633 IPR036517 -
Amo19g4247 839 ProSiteProfiles FF domain profile. 352 406 IPR002713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4247 Amo-Chr19 159192126 159200331 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4247 K12821 - gmx:100777778 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4247 19 159192126 159200331 Amo19g4247 19 159192126 159200331 ECH