Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4245 ATGAAGCTGAGAGTCAGATCCCTGGAATCCAAAGAAACCCTAAAGATCGAAGTCCCCAATTGCTGTTCATTGCAGCAACTCAAAGACACCATTTCACATGTCATATCCTCATCTTCATCTTCTTCTCTTCATCTATCCCTCAACAGGAAGGACGAAATCCACGCTTCCTCGCCCGACGACTCCATCCAATCTCTAGGCATCGCCTCCGGAGACCTCGTCTTCTACACCCTCAACCCCACCGCCTTCTCCCCCGAAACTCAAACCCTCCTTCACAAACCCACCCCACAAGAACCGTTCAATTCATGCGACGTGCCCTCGATTCAACACTCTTCTGAAATCCTCATGGTTGACGCTCCCTCGATTCCCGAGGCGGAAAAAATTCCGTCTTTGGAGTCTTCAACTGCGGAAACCGTCGATATGGCTGATGGGTCTGGTGGAGAGGAAGTGGTTGTCAGGAAGACCAATTCCGAAGCTTCGTTCGTCAAAAGGGTGTTGAAAGAAGCGAATGGAAATGACGTTACCGACCTCAAGTTGTTGGTTCTCGTGGTACATGCTGTTATTCTGGAATCTGGGTTCGTTCGTGCTGAAAAGATTTCGCCTTTGGGGGTTGGTTCCTCTCATATTCTGGATGAGTGGCCTTCAGCTTCAGCTTCTTCGATATCGTTGAGGTATACTCTGCCTGAGATTCTAACTAGTGATTCTGGTGTTTCGCGTACTGTGTTATTGAAATTTCAGACATTAGGGCATCTTGTGAATGTTTATGGGTCTTTGTTTGATGATGCTGGGTCGGAGGTCCATAGGGTGTCTTTGGATAAGCGTAAATTTGCCAAGCCCTTGAAGTTGATGCTGGAAAATTTTGAATCCAAGGATAATTTTGATGATGATGCTGTTGTTGATCAACAAAGTGAGATTTTTGAGTTGTGGAAGATGGTGAAGGATAGGCTTGCATTGCCATTATTGATTGATCTTTGTGACAAAGCTGGATTGGATCCTCCACCGTGTTTTATGAGGCTCCCCACAGAACTTAAGATCATGATTTTGGAGCGTCTTCCTGGTGTTGATGTGGCCAGGGTGGCTTGCTTGTGTACAGAACTGCAATACCTGTCTGGCAATAATGACCTCTGGAGGAAGAAGTTTGAGGAGGAGTTTGGAGTTGCTGGGTGTAGAGCGGTGTTCTTTAAGGAGTTTTTTGCTTTACACTGGGAAACAAGGAAGAGATCGATGCAACCGGTTTTTCCTATTCAAATGAGGCAACGACCTTATGCATTATTCCCAGCAAGGAGGGACCGTAATCCTTTTGGAATACCTTCAATTGTGGGTGGAGACTATGATCGGCTCCCAGGATTCGGTCTACAATTCCCTACATACTCACCAAGGCGGACTTTCCTCCCACCGTGTCACCGTGGAGGATTCCATCACTAG 1422 0.4677 MKLRVRSLESKETLKIEVPNCCSLQQLKDTISHVISSSSSSSLHLSLNRKDEIHASSPDDSIQSLGIASGDLVFYTLNPTAFSPETQTLLHKPTPQEPFNSCDVPSIQHSSEILMVDAPSIPEAEKIPSLESSTAETVDMADGSGGEEVVVRKTNSEASFVKRVLKEANGNDVTDLKLLVLVVHAVILESGFVRAEKISPLGVGSSHILDEWPSASASSISLRYTLPEILTSDSGVSRTVLLKFQTLGHLVNVYGSLFDDAGSEVHRVSLDKRKFAKPLKLMLENFESKDNFDDDAVVDQQSEIFELWKMVKDRLALPLLIDLCDKAGLDPPPCFMRLPTELKIMILERLPGVDVARVACLCTELQYLSGNNDLWRKKFEEEFGVAGCRAVFFKEFFALHWETRKRSMQPVFPIQMRQRPYALFPARRDRNPFGIPSIVGGDYDRLPGFGLQFPTYSPRRTFLPPCHRGGFHH* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4245 473 Pfam F-box domain 335 377 IPR001810 GO:0005515
Amo19g4245 473 Gene3D - 1 77 - -
Amo19g4245 473 SUPERFAMILY F-box domain 328 386 IPR036047 GO:0005515
Amo19g4245 473 PANTHER F-BOX PROTEIN SKIP22 1 472 - -
Amo19g4245 473 Gene3D - 158 335 - -
Amo19g4245 473 Gene3D - 336 416 - -
Amo19g4245 473 SMART fbox_2 338 378 IPR001810 GO:0005515
Amo19g4245 473 ProSiteProfiles F-box domain profile. 332 378 IPR001810 GO:0005515
Amo19g4245 473 PANTHER F-BOX PROTEIN SKIP22 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4245 Amo-Chr19 159187696 159189703 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4245 K10293 - gmx:100796338 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4245 19 159187696 159189703 Amo19g4245 19 159187696 159189703 ECH