Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4237 ATGAATAACTTCAATAGCACTCTTCTTCCTCATTGGGATTGTGTCCTCCATTTTGTTTCAATTTCAGTTGCATCTGTTGTTTCAACAGGAAACTTCAATAAGGACTTCTATGTTTTATGGTCACCTACCCATGTAAACACATCTGCTGATGGACACACTAGAACTTTGAAGCTTGATCAACAATCCGGGGCTGGTTTTGCTTCAAATCAGATGTTTTTGTTTGGACAAATTGACATGCAAATCAAACTAGTACCAGGTGATTCTGCAGGCACAGTATTAGCCTACTATATGGCATCTGATCAACCAAATCGCGACGAGATTGACTTTGAGTTTCTAGGAAACATGTCTGAGCAGCCTTATATTCTTCAAACAAATATTTATGCAGATGGGTTTGGCAATAGAGAGGAGAGGATTTATCTATGGTTTGATCCTACAAAGGACTTCCATACTTACTCAGTGTTGTGGAATCTGCACCAGATTGTGTTCATGGTGGATAGCATTCCAATAAGAGTGTACAGAAACCATGGTGACAAGGGAGTTCCATTTCCAAGAAGGCAACCAATGAGTCTAGAAGCAACTCTTTGGAATGGTGATAGCTGGGCAACAAGAGGAGGTCAAGACAAGATAGATTGGACAAAGGGTCCCTTCATAGCTTCATTCAGGAACTACAACATTGATGCTTGTGTGTGGAAAGGGAACCCAAGGTTCTGCAGAGTAGCTAGCCATGTTAATTGGTGGAACCTAAACAACTTCAGCACACTCACATCCCCACAAAGAAGGTGGTTCAAATGGGTCAGGAAATACCATATGATTTATGATTATTGCCAAGACAATGAGAGGTTCCAAAACAATCTTCCACAGGAATGTCCCTTCCCAAGTATTGATAACCAGAAAAGAAACTTTATTACTGGTTTTGATACCAAAAAGTGA 930 0.4032 MNNFNSTLLPHWDCVLHFVSISVASVVSTGNFNKDFYVLWSPTHVNTSADGHTRTLKLDQQSGAGFASNQMFLFGQIDMQIKLVPGDSAGTVLAYYMASDQPNRDEIDFEFLGNMSEQPYILQTNIYADGFGNREERIYLWFDPTKDFHTYSVLWNLHQIVFMVDSIPIRVYRNHGDKGVPFPRRQPMSLEATLWNGDSWATRGGQDKIDWTKGPFIASFRNYNIDACVWKGNPRFCRVASHVNWWNLNNFSTLTSPQRRWFKWVRKYHMIYDYCQDNERFQNNLPQECPFPSIDNQKRNFITGFDTKK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4237 309 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 291 IPR013320 -
Amo19g4237 309 Gene3D - 18 292 - -
Amo19g4237 309 CDD GH16_XET 29 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo19g4237 309 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 15 290 IPR044791 GO:0004553
Amo19g4237 309 PIRSF EndGlu_transf 4 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo19g4237 309 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Amo19g4237 309 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Amo19g4237 309 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 220 IPR000757 GO:0004553|GO:0005975
Amo19g4237 309 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo19g4237 309 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 10-RELATED 15 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4237 Amo-Chr19 159089071 159090286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4237 68 293 Glycoside Hydrolase AT2G14620 73.009 1.36e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4237 K08235 - gmx:100783152 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4237 19 159089071 159090286 Amo19g4237 19 159089071 159090286 ECH