Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4171 ATGCAAAGCATCATTTATCTTTGCGTAACAATCATCTTGTGCATTCACACAAACAATAAGTGTGGTTTCCTCGTACAAGGTCTCACCTCTGTACTCACCTCATCCTCAGATATTGAAGCACTAAAGGCTTTCAAGGCCTCAATCAAACCCTCCTCAATAACACCATGGTCATGCATAGCATCCTGGAACTTCACCACTGACCCATGTTCCGTCCCTCGCCGCACCCACTTCACGTGCGGCCTCACCTGCACCGCCGACAACACCCGCATCAACCAAATCACCCTCGACCCCGCTGGCTACACAGGAACACTCACCCCACTCGTCTCTCAACTCACCTCACTCATCACTCTCGACCTCTCCGATAACTCTTTCTATGGCACAATCCCTTCTTCTCTATCTTCCCTCTCAAAACTCCAAACTTTATCCCTCCGATCCAACTCTTTCTCAGGTTCAATCCCTCCCTCCATAGCCACCCTCAAATCGCTCCAATCGCTTGATCTTTCACAGAATTCTCTTTCTGGGTTCCTTCCAAAGTCCATGAACTCTCTCACTAGTCTCCGAAGATTGGACCTCAGCTTCAACAAGCTCACCGGTGGACTCCCCAAGTTACCACCCAACTTGCTGGATTTGGCGATCAAGGCAAATTCTCTATCTGGGGTTCTTCAAAAAACAACCTTTGAAGGTTTGAACCAGTTGGAAGTGGTGGAACTCAGTGATAACGCACTTCAGGGGATCATCGAAACGTGGCTCTTCCTTTTGCCTTCCCTGCAGCAACTGGATTTGGCCAACAACTCCTTCAGTGGTGTTGAGATCTCGAGGCCGGTTGTTGGCGGTGGCGGGAACAGCCTCGTGGCGGTGAATCTTGGATTCAACAAGATCCAAGGCTACGCCCCCGCGAATCTCGGCGCGTATCCGTCGCTGTCATTTTTGTCGCTCCGTTACAACGCGCTACGTGGCGCGATACCATTGGAATACGGGAAAAGCAAGTCCATGAAGAGGTTGTTCCTGGACGGGAACTTCCTAATGGGGAGGCCACCGGCGGGACTGGTGGCTGCCGGAGCTGAAGTTTCCGGCAGCTTGGGTGACAACTGCCTTGAGGGGTGTCCGGCGATGTCGCAGCTGTGCACGCCGAAACAGAAACCGAGCTCTGTTTGCAAGCAAGTCTACCGTGGAAGACCTACGAGATAG 1188 0.5185 MQSIIYLCVTIILCIHTNNKCGFLVQGLTSVLTSSSDIEALKAFKASIKPSSITPWSCIASWNFTTDPCSVPRRTHFTCGLTCTADNTRINQITLDPAGYTGTLTPLVSQLTSLITLDLSDNSFYGTIPSSLSSLSKLQTLSLRSNSFSGSIPPSIATLKSLQSLDLSQNSLSGFLPKSMNSLTSLRRLDLSFNKLTGGLPKLPPNLLDLAIKANSLSGVLQKTTFEGLNQLEVVELSDNALQGIIETWLFLLPSLQQLDLANNSFSGVEISRPVVGGGGNSLVAVNLGFNKIQGYAPANLGAYPSLSFLSLRYNALRGAIPLEYGKSKSMKRLFLDGNFLMGRPPAGLVAAGAEVSGSLGDNCLEGCPAMSQLCTPKQKPSSVCKQVYRGRPTR* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4171 395 SMART LRR_typ_2 253 274 IPR003591 -
Amo19g4171 395 SMART LRR_typ_2 111 135 IPR003591 -
Amo19g4171 395 SMART LRR_typ_2 183 210 IPR003591 -
Amo19g4171 395 SMART LRR_typ_2 159 182 IPR003591 -
Amo19g4171 395 SMART LRR_typ_2 229 252 IPR003591 -
Amo19g4171 395 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Amo19g4171 395 Gene3D Ribonuclease Inhibitor 203 370 IPR032675 -
Amo19g4171 395 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515
Amo19g4171 395 Pfam Leucine rich repeat 205 265 IPR001611 GO:0005515
Amo19g4171 395 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Amo19g4171 395 PRINTS Leucine-rich repeat signature 162 175 - -
Amo19g4171 395 PRINTS Leucine-rich repeat signature 183 196 - -
Amo19g4171 395 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 30 393 - -
Amo19g4171 395 SUPERFAMILY L domain-like 79 346 - -
Amo19g4171 395 Gene3D Ribonuclease Inhibitor 34 202 IPR032675 -
Amo19g4171 395 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 30 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4171 Amo-Chr19 158243970 158245841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4171 39 389 Receptor kinase-like Gene Family AT3G05360 32.086 1.67e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4171 - - gmx:100801713 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4171 19 158243970 158245841 Amo19g4171 19 158243970 158245841 ECH