Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4131 ATGGAAAGAGTAGTTAAATCGGGTCTTGAAACTCCACTGTGCCCTCCAAACCAAGAACCTGATGATCAGAGATTTGAACAATGTTGTTGCCTTAGAGAAGACATTGTTGAGGAAGCTAAGAAGCAACTATGGCTAGCAGGGCCTCTTATTGCAGTTAGTTTGCTTCAATACAGCTTACAAATGATATCTATAATGTTTGTTGGCCATCTTGGCAACTTGTTTCTTTCTGGTGCTTCCTTGGGTTTCTCCTTTGCTTCTTGCACTGGTTACAGTGTTTTGTTAGGAATGGGGAGTGCATTGGAGACACTATGTGGGCAAGCATATGGAGCCAAGAAGTATCACATGCTAGGAATCCACACACAAAGGGCAATGATTGTTCTTCTATCTCTAAGTATTCCATTATCATTAATCTGGTTTTACACAAGCAACCTCCTCACTGTAATGGGACAAGACCATGAGATATCGGCTGTGGCCGGAACATATAATCGCTGGATGATCCCTGGCCTTTTTGCTTATGCCATCCTTCAATGCCTCAACAGATTTCTGCAGACTCAAAACAATGTTTTTCCAATGCTTATAACCTCTGGAATCACAACTTCGGTGCATGCAGCATTTTGTTGGCTTTTTGTGTATGAATTTGACTTAGGTAGCAAAGGCGCAGCATTGGCCATCAGCTTGTCTTATTGGGTTAATGTGTTCCTATTGGTGATTTACATAAACTGTTCTAGAGCTTGTGCATCAACTTGGAATGGAGTTTCCAAAGAGGCCTTGAATGACATTCTCAGCTTTATAAAACTAGGAGTTGCTTCAGCAGTTATGATATGCTTTGAATATTGGTCGTTTGAGATGGTTGTGCTTCTCTCAGGTCTTCTGCCAAACCCACAACTAGAGACATCTGTTTTATCAATAAGCCTTAATACATGTTGGATGGTTTATCAGATATCTGTTGGTCTTGGTGGTGCCATAAGCACCCGTGTTTCAAATGAACTGGGTGCTGGGAATGCACGAGGCGCGCTCTTGGCTCTTCATGTCATGATTGCAACTGCCATATTAGAGGGTACAACAATAGCATTGATCACCATTTTGGTGAGGAATGTTTGGGGAAAGCTCTACAGCAATGAAGATCAAGTTATAAGATATGTTTCCAAGATGATGCCTCTACTTGCACTCTCTGACTTCCTGGATGGCTTCCAGTGTGTTCTTTCAGGAGCTGCTAGAGGGTGTGGTTGGCAAAATCTATGTGCATCTATAAACCTTGGTGCTTACTATGTTGTGGGAATTCCTTCTGCTATCTTATTTGCATTTGTGTTTCATATGGGAGGGATGGGACTTTGGATAGGAATCATATGTGGACTTTCTGTTCAGGGGATAGCACTAGTTACAGTAAATGTATGCACAGATTGGGATAGAGAGGCAAGGAAAACAGTTCACACAACTCAGGAAACTACTAACATGGTTGTAGAACCGTAG 1470 0.4197 MERVVKSGLETPLCPPNQEPDDQRFEQCCCLREDIVEEAKKQLWLAGPLIAVSLLQYSLQMISIMFVGHLGNLFLSGASLGFSFASCTGYSVLLGMGSALETLCGQAYGAKKYHMLGIHTQRAMIVLLSLSIPLSLIWFYTSNLLTVMGQDHEISAVAGTYNRWMIPGLFAYAILQCLNRFLQTQNNVFPMLITSGITTSVHAAFCWLFVYEFDLGSKGAALAISLSYWVNVFLLVIYINCSRACASTWNGVSKEALNDILSFIKLGVASAVMICFEYWSFEMVVLLSGLLPNPQLETSVLSISLNTCWMVYQISVGLGGAISTRVSNELGAGNARGALLALHVMIATAILEGTTIALITILVRNVWGKLYSNEDQVIRYVSKMMPLLALSDFLDGFQCVLSGAARGCGWQNLCASINLGAYYVVGIPSAILFAFVFHMGGMGLWIGIICGLSVQGIALVTVNVCTDWDREARKTVHTTQETTNMVVEP* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4131 489 PANTHER PROTEIN DETOXIFICATION 18 478 - -
Amo19g4131 489 TIGRFAM matE: MATE efflux family protein 48 445 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo19g4131 489 CDD MATE_eukaryotic 38 474 IPR045069 GO:0042910|GO:1990961
Amo19g4131 489 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g4131 489 Pfam MatE 270 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo19g4131 489 Pfam MatE 48 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo19g4131 489 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4131 Amo-Chr19 157868484 157871500 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4131 K03327 - cit:102621442 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4131 19 157868484 157871500 Amo19g4131 19 157868484 157871500 ECH