Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4040 ATGGAGACCCCCTTTGCCTTTATAACCTCACCTCCCACTCCTACACGCTCTCCATCAATCACAATTCACAACTCACATTGTCTTCCATCTTCTCAAATAATCAACATGCCTCCCATGTTGCCGGATTTCTCCAACTCCGTGAAGCTCAAGTATGTCAAGCTTGGATACCAATACCTTGTTAACCACATTATCACACTCACCCTCGTTCCAATCATGCTGGGAGTCTCCATTGAGATTCTACGCTTAGGCCCCCAAGAGATCCTTAATCTCTGGAATTCCCTGCACTTCAACCTCGTTCAGATCCTCTGCTCCGCTTTCCTCATCATCTTCGTTGCCACCGTCTACTTCATGTCAAAGCCACGTACAATTTACCTCGTTGACTATGCTTGCTTCAAGCCACCGGTAACATGCCGGGTCCCCTTCGCCACCTTCATGGAGCACTCAAGGCTCATCCTCAAGAACAACCCCAAGAGTGTGGAGTTCCAGATGAGGATCCTTGAGCGCTCCGGCCTCGGCGAAGAGACCTGTCTTCCTCCTGCCATTCACTACATCCCTCCCAAGCCTACCATGGAGGCCGCTCGCGGCGAGGCCGAGCTTGTCATCTTCTCAGCCATGGACTCTTTGTTTAAGAAAACCGGCCTCAAGCCTAAGGATATCGACATTCTCATAGTGAATTGCAGTCTCTTCTCTCCAACTCCTTCCTTGTCCGCCATGGTTATCAACAAGTACAAGCTCAGGAGCAACATCAAGAGCTTCAACCTTTCGGGGATGGGTTGCAGTGCGGGTCTCATCTCCATAGACCTAGCACGCGATCTTCTTCAGGTTCATCCCAATTCCAACGCCGTGGTTGTCAGCACTGAGATTATCACGCCTAACTACTACCAAGGCAACGAGAGAGCCATGCTTCTTCCGAACTGCTTGTTCAGGATGGGCGGCGCCGCCATCCTCTTGTCGAACCGGAGATCGGAACGGAGAAGAGCCAAGTACAGATTGGTCCACGTGGTTAGAACTCACAAGGGTGCCGATGACAAAGCCTACCGTTGTGTGTTCGAGGAAGAAGACAAAGAAGGAAAGGTTGGGATTTCGCTGTCCAAAGACCTCATGGCCATTGCAGGGGAAGCTTTGAAGTCGAACATCACAACCATGGGTCCGCTTGTTCTTCCGGCATCGGAGCAGCTTCTCTTCCTTCTGACACTGATTGGGAGGAAAATCTTCAACCCTAAGTGGAAGCCATACATCCCTGACTTCAAGCAAGCTTTCGAGCACTTCTGCATCCACGCGGGTGGACGCGCTGTGATCGACGAGTTGCAGAAGAATCTTCAACTGTCGACGGAGCACGTGGAAGCTTCCAGAATGACCCTTCACAGGTTCGGCAACACTTCGTCTTCTTCTCTGTGGTATGAACTGAACTACATTGAATCCAAAGGGAGGATGAAGAAAGGGGATAGGGTGTGGCAGATTGCTTTCGGGAGTGGGTTCAAATGCAACAGCGCCGTGTGGAAGTGTAACAAGACCATTAAGACCCCCATTGATGGACCTTGGGCTGATTGCATTGATCGTTACCCTGTTCACATTCCTGAGATCGTTAAGCTCTAG 1596 0.5063 METPFAFITSPPTPTRSPSITIHNSHCLPSSQIINMPPMLPDFSNSVKLKYVKLGYQYLVNHIITLTLVPIMLGVSIEILRLGPQEILNLWNSLHFNLVQILCSAFLIIFVATVYFMSKPRTIYLVDYACFKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPKPTMEAARGEAELVIFSAMDSLFKKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAILLSNRRSERRRAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTMGPLVLPASEQLLFLLTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSTEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKKGDRVWQIAFGSGFKCNSAVWKCNKTIKTPIDGPWADCIDRYPVHIPEIVKL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4040 531 PIRSF Very_long_ch_3-ktacl-CoA_syn 42 531 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo19g4040 531 PANTHER 3-KETOACYL-COA SYNTHASE 5-RELATED 41 530 - -
Amo19g4040 531 Gene3D - 148 501 IPR016039 GO:0016746
Amo19g4040 531 SUPERFAMILY Thiolase-like 109 327 IPR016039 GO:0016746
Amo19g4040 531 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 419 501 IPR013747 -
Amo19g4040 531 PANTHER 3-KETOACYL-COA SYNTHASE 41 530 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo19g4040 531 CDD CHS_like 108 500 - -
Amo19g4040 531 Pfam FAE1/Type III polyketide synthase-like protein 115 403 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo19g4040 531 SUPERFAMILY Thiolase-like 332 502 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4040 Amo-Chr19 156547231 156549417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4040 40 531 Miscellaneous Gene Families AT1G25450 83.740 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4040 K15397 - gmx:100815887 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4040 19 156547231 156549417 Amo19g4040 19 156547231 156549417 ECH