Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3935 ATGGGAGTTCAACAACACAAAGTGCGTTCTAGAGGCAATGAGGCTGGTGGGAATGCTTGCACCAGCAGTTCATCCAATCACGGTGATGCTATGAATGCGTCCCCAGCATCGGCTGTTAGCAATCCAAGTGTAAATAGTAGTAATACTGATGGTGATGAAGTTAATGGACCTAGTGACATTTCTGCCAAGAAAAATATTACCCCACATATTTACAGGCAAGATGTTGTTAAAAATAAAACCAATGGAGCAATTGGGATTGTAACAGAAGTTGCTGGTGATTCAGATTCAGATTCAGATAGTAGCGTTACTGATGATGAGGATGATAGTGAGGATGAGGATGATGATCTTGAGGAAAGCAATGGTGATGCTAATAATAATAATGCTAGCAAAAATTCTGATAGGAATGGCACTGATGGGCACTCCAAAACTGGTGCCCTTCTAGCTGACCAGCTGCGTGTACTCTGGATGGATGAATCTGAATCTACTCGAAATTTCAGTGATGTAGAAGTAGTTGATCGTGGATTTTTACATGGGGATTTTGTTGCCGCTGCTTCAGACCCTACTGGTCAAGTCGGTGTAGTGGTAGATGTGAATACGTCTGTGGATTTGTTGGCCCCTGATGGATCTACAATAAAAGAGATCTCATCCAAAAACTTAAAACGTATTAGGGACTTTACCATTGGTGATTATGTTGTGCTTGGTCCTTGGCTAGGCAGAATCGATGATGTTTTAGATAATGTGACTGTCCTATTTGATGATGGTTCAGTGTGTAAAGTCACCAAAGCAGATCCTTTGAATCTTAAACCAATTTCTAAGAATATGCTTGAAGATGTGCATTTCCCCTATTACCCTGGGCAACGTGTAAGGGCTAGTTCATCATCAGTTTTCAAGAATTCAAGATGGCTGTCTGGCTTGTGGAAAGCAAATCGGTTGGAAGGTACTGTCACTAAGGTTACAGTTGGGTCAGTGTTTGTTTATTGGATGGCATCTGCAGGTTATGGGGCGTATTCTTCTACTGCACCAGCTGAAGAGCAAAGTCCAAGGAACCTAAAATTGTTGTCCTGTTTTGCACATGCAAATTGGCAATTAGGTGACTGGTGTCTCTTGCCCTCATCAGCATATTCATCATCAATTTCCATGGAGAAAGGCATGTCAAAATTAGAACTTAATGATTCTGTTTACAATGAATTAGATTCTAATCCAACAGGAAGTGGATGTGATTCAGAAGATGCTGCTGTTGAGGAATCTAATGGGAATAAGGATGCTATGGACCTTGATCCAGTGAATTCTTTGGGAGGGAGTGATGGAGCTGCTGTAAGTAACACATCTCGTGATAATAGCTCATGTGGTAGTTCCATCTCGGTATCTAAGGAACCGGTACATGAGACTTGGCCTCTTCATCGTAAGAAAATAAGGAAAGTTGTAATTAGGAAGGAAAAAAGGGCCCGAAAGAAAGAGGAAAATTTTGAGAAAGCTCTTTTGATTGCCAACACAAGGACACGTGTTGATGTCGCATGGCAGGATGGCACCATAGAGCGTGGACTACATTCTACAAGCCTGATTCCTATAGATAATCCTGGTGATCATGAATTTGTTTCGGAACAATATGTGGTTGAGAAGACATCTGATGATGGTGAGGATACTTGTGAAGCTAGGCGTGTTGGGGTGGTTAGAAGTGTTAATGCTAAGGAGCGGACAGCTTGTGTGAGGTGGTTAAAACCAGTTGAACGTCCAGAAGATCCTAGAGTTTTTGACAAGGAGGAAATAGTAAGTGTATATGAGCTAGAGGGCCACCCAGATTATGATTACTGCTATGGAGATGTGGTTGTTCGGCTGTCACCTGTGTCTGTCTGGATAGAGACAGATTCTGTTGGAGAGTCCACTAAGAAATTGTCCCAGAAAAATGAGGAAGTTGGGATGAAAAAGGAAACAAAAAGCCCTACAGGTTCCAGTAGTAGTAAAGCAGAAAATGCATCTGGCGGGCAAACGTGTGCAGAGTTCTCTGACCTTTCTTGGGTTGGGAATATAACTGGTCTTAACAATGGTGATATTGAAGTTACTTGGGCAGATGGGATGGTGTCAACGGTCGGACCCCAGGCAATCTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGAAGTGAACTAAGTGATGCTGCAAGCTGGGAAACTGTTAATGATGATGAAATGGAAGTCGATGAGGACTCCAAAGAGGATATCGAGAGGGAAAATTCAAGCAGTGTTACTTCTGAGGCAGATGAGACTGGAGAGAACGATTCTGGAACGGCTGCTGCACTTTCTTCTGTACCCCTAGCAGCCTTACGATTTGTCACCAGACTTGCCTCGGGGATATTCTCAATGGGCCAAAGGAACTTAGATTCCGCTGACTCACAGTCCAAAAGTGAAAGTGAACATAGTGATGAGTCTTGTTCTCAGCAATGTCTCAACAATGATGGGGACAATTTAAGCAATAAAAATGAAATAAATGAAGAAGCTGCTGCTCAAGAAGCAGCTGAAATATTGAAAACACTTGGGACAGAGTGTAGCCTTAGCACTGAAGATGCTCCAGCAACTTGCGACAATGATATTTGTAGTTTCAAACACTTCGACATAGCGACAGACCCTTCAGACAATTACTTTATTGGTGCAAATGGACAGAGTAATAACCGAAAATGGTTTAAGAAGGTGCAACAAGATTGGAGCATACTGCAGAATAACCTTCCAGAGGAAATCTATGTCCGAGTTTATGAGGATAGAATGGATCTTTTGAGAGCAGTTATTGTAGGGCCATACGGGACCCCATACCAAGATGGTCTCTTTTTCTTTGATTTTCACCTTCCACCAGAGTACCCTGATGTGCCACCATCAGCATATTATCATTCTGGTGGTTGGCGTATTAACCCTAATTTGTACGAGGAAGGGAAGGTGTGCCTGAGCCTTCTAAATACATGGACGGGCAGAGGAAATGAAGTATGGGATCCAAAATCTTCCAGTATCCTTCAAGTCCTAGTTTCACTACAAGGTTTGGTGCTCAACTCTAAGCCTTACTTCAACGAAGCTGGGTATGACAAACAGATTGGAACAGCAGAAGGAGAGAAGAATTCACTGTCATACAATGAGAATACGTTTTTACTCAACTGCAAGACTATGATGTACCTTATGCGTAAACCCCCCAAGGACTTTGACATGCTCATCAAAGAACATTTTAGGCAGCGCGGTCATAACATCCTCAAGGCTTGTGATGCATATATGAAAGGTTACTTGATTGGCACATTGACCAAAGATGCTTCTGTGAGTGACAAGAGTGAACAGAATTCAACTTCTGTGGGTTTCAAGTTGATGTTAGCCAAGATAGTGCCAAAGCTTTTCTCGTCATTGAGCAATGTTGGCGCGGATTGCGAAGAATTCAAGCATCTGAAAGAGTTGTAG 3438 0.4247 MGVQQHKVRSRGNEAGGNACTSSSSNHGDAMNASPASAVSNPSVNSSNTDGDEVNGPSDISAKKNITPHIYRQDVVKNKTNGAIGIVTEVAGDSDSDSDSSVTDDEDDSEDEDDDLEESNGDANNNNASKNSDRNGTDGHSKTGALLADQLRVLWMDESESTRNFSDVEVVDRGFLHGDFVAAASDPTGQVGVVVDVNTSVDLLAPDGSTIKEISSKNLKRIRDFTIGDYVVLGPWLGRIDDVLDNVTVLFDDGSVCKVTKADPLNLKPISKNMLEDVHFPYYPGQRVRASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFVYWMASAGYGAYSSTAPAEEQSPRNLKLLSCFAHANWQLGDWCLLPSSAYSSSISMEKGMSKLELNDSVYNELDSNPTGSGCDSEDAAVEESNGNKDAMDLDPVNSLGGSDGAAVSNTSRDNSSCGSSISVSKEPVHETWPLHRKKIRKVVIRKEKRARKKEENFEKALLIANTRTRVDVAWQDGTIERGLHSTSLIPIDNPGDHEFVSEQYVVEKTSDDGEDTCEARRVGVVRSVNAKERTACVRWLKPVERPEDPRVFDKEEIVSVYELEGHPDYDYCYGDVVVRLSPVSVWIETDSVGESTKKLSQKNEEVGMKKETKSPTGSSSSKAENASGGQTCAEFSDLSWVGNITGLNNGDIEVTWADGMVSTVGPQAIYVVGRDDDDESIAAGSELSDAASWETVNDDEMEVDEDSKEDIERENSSSVTSEADETGENDSGTAAALSSVPLAALRFVTRLASGIFSMGQRNLDSADSQSKSESEHSDESCSQQCLNNDGDNLSNKNEINEEAAAQEAAEILKTLGTECSLSTEDAPATCDNDICSFKHFDIATDPSDNYFIGANGQSNNRKWFKKVQQDWSILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFDMLIKEHFRQRGHNILKACDAYMKGYLIGTLTKDASVSDKSEQNSTSVGFKLMLAKIVPKLFSSLSNVGADCEEFKHLKEL* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3935 1145 MobiDBLite consensus disorder prediction 627 643 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 98 120 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 15 55 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 626 661 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 811 827 - -
Amo19g3935 1145 CDD UBCc 897 1047 IPR000608 -
Amo19g3935 1145 Pfam Ubiquitin-conjugating enzyme 899 1043 IPR000608 -
Amo19g3935 1145 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 64 1143 - -
Amo19g3935 1145 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 894 1054 IPR000608 -
Amo19g3935 1145 Gene3D Ubiquitin Conjugating Enzyme 863 1131 IPR016135 -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 726 741 - -
Amo19g3935 1145 SUPERFAMILY UBC-like 878 1061 IPR016135 -
Amo19g3935 1145 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 64 1143 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 794 827 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 398 457 - -
Amo19g3935 1145 SMART ubc_7 897 1054 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 88 142 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 726 765 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 644 661 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 434 457 - -
Amo19g3935 1145 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3935 Amo-Chr19 155078019 155084585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3935 172 374 Miscellaneous Gene Families AT2G33770 41.176 2.56e-49 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3935 K10581 - gmx:100809513 1725.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3935 19 155078019 155084585 Amo19g3935 19 155078019 155084585 ECH