Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3922 ATGGCGGCGACTGCCACGTGGCAGCCACAGGAGCAAGGGTTCAAGGAGATCTGCGGCCTCCTCGAGCAGCAGATTTCGCATTCTTCTTCCGCTGACAAGGCTCAGATTTGGCAGCACCTTCAGCACTACTCTCAGTTCCCCGACTTCAACAATTACCTCGCCTTCATCTTCTCTCGTGCTGAGGGAACATCAGTGGAGGTTAGGCAAGCTGCGGGTCTTTATCTGAAGAATAACCTCAGAAGCACATATAAATCGTTGCTTCCTGCATACCAACAGTATGTGAAATCCGAGTTGCTGCCGTGTCTTGGGGCATCAGATAGGCACATAAGGTCCACTGCTGGAACTATTATTAGTGTTGTCGTTCAATTAGGTGGAGTTTCAGGCTGGCCTGAATTGTTGCAAGCCCTTGTAACTTGCTTGGACAGTAATGATTTGAGTCACATGGAAGGTGCAATGGATGCATTATCCAAGATCTGTGAGGATATTCCCCAAGTACTTGATGCTGAAGTACCTGGGTTAGCAGAGCGCCCTATTAACATATTTCTCCCCAGATTATTTCGGTTTTTCCAGTCACCTCATGCTTCATTAAGAAAGCTGTCATTGGGTTCTGTAAATCAGTACATTATGTTAATGCCTACTGCCTTGTACGTATCCATGGACCAATATCTCCAAGGTTTATTTATCCTTTCAAATGACCCTAATTCTGAAGTGCGGAAATTGGTTTGTGCAGCGTTCGTCCAGCTAATTGAAGTTCGTCCATCTTTCTTAGAGCCACATTTAAGGAATGTGATTGAGTACATGTTGCAAGTCAACAAGGACACAGATGATGAAGTCGCCCTTGAAGCCTGTGAATTCTGGTCTGCATATTGTGACGCTCAACTGCCACCTGAAAATTTACGAGAATTCTTGCCTCGTTTAATTCCGATTTTGTTGTCAAACATGGCTTATGCAGATGACGACGAATCTCTTGTTGAAGCTGAGGAAGAAGGATCTCAACCAGATCGAGACCAGGATCTTAAACCGCGATTTCATGTATCAAGGTTTCATGGATCAGATGAAATCGATGATGATGATGATGACGTTGTCAATACATGGAATCTACGGAAATGCAGTGCTGCCGCTCTAGATATTCTCTCAAATGTGTTTGGAGATGAGATCCTTCCAACTTTGATGCCTATTGTTCAGGCCAAGTTGTCAACTGGTGGTGATGATGCTTGGAAAGAAAGGGAAGCTGCTGTCTTGGCTCTTGGGGCGATAGGAGAGGGTTGCATCAATGGTCTTTATCCTCATTTGGCTGAGATTGTGGCATTTCTAATCCCCCTTCTTGATGATAAGTTTCCTTTGATACGAAGTATTTCATGCTGGACACTCTCTCGGTTTAGCAAATTTATTGTTCAGGGTATTGGACACCCAAAAGGCTATGACCAATTTGATAGTGTTCTTATGGGTCTTCTTCGAAGAATTTTGGATGATAATAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCAACACTTGAAGAGGAGGCTGCAGAAGAGTTGGCACCACGATTAGAAATTATATTGAAGCACCTGATGCTAGCGTTTGGGAAATATCAGAGACGAAATCTCAGAATTGTATATGATGCCATTGGAACTCTAGCTGAAGCTGTTGGTGGGGAGCTGAATCAGCCTGTTTATCTTGACATTCTCATGCCACCATTAATAGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTCTTTCCTCTCTTGGAATGCTTTACATCTATAGCACATGCATTGGGCACAGGATTCTCTCAATTTGCTGAACCAGTATTTAAGAGGTGCATAAATATAATCCAGACCCAACAATTTGCAAAGGCTGATCCTGTTGCAGCTGGTGTTCAGTATGACAAGGAGTTCATTGTATGCTCTCTTGATCTGCTATCAGGACTAGCAGAGGGTCTTGGCAGTGGAATAGAGAGTCTGGTTTCACAATGTTCCTTGAGGGACCTACTTCTGCATTGCTGTGTGGATGACGCTCCTGATGTTCGACAAAGTGCCTTTGCATTGCTTGGAGACCTTGCTCGAGTATGCCCAATTCATTTGCACCCTCGTTTGTCTGAGTTTCTTGAGGCTGCAGCCAAGCAGCTGGAAATTTCTAAGGTTAAAGAGGCTATTTCAGTAGCAAATAATGCATGCTGGGCTATTGGAGAACTTGCAGTTAAGGTTCGTCAGGAAGTTTCTCCCATTGTTTTAACTGTAATTTCATGCCTTGTCCCAATTCTTCAGCATGCAGAGGGACTCAACAAGTCACTCATAGAAAACAGCGCAATAACACTAGGGAGGCTTGCATGGGTCTGTCCAGAACTTGTATCTCCACATATGGAGCATTTCATGCAACCTTGGTGCACTGCTCTGTCAATGATACGGGATGATGTTGAGAAAGAAGACGCTTTTAGAGGTCTATGTGCTATGGTCAAAGCTAATCCTTCTGGAGCTCTAAGTTCACTTGTGTATATGTGTACAGCCATAGCAAGTTGGCATGAAATAAGGAGTGAAGATTTACACAATGAAGTCTGCCAGGTTTTGCATGGATATAAACAGATGCTGCGTAACGGAGCATGGGACCAGTGTATGTCTGCTTTGGAGCCCCCGATAAAAGAAAAGCTTTCGAAATATCAAGTATAA 2676 0.4391 MAATATWQPQEQGFKEICGLLEQQISHSSSADKAQIWQHLQHYSQFPDFNNYLAFIFSRAEGTSVEVRQAAGLYLKNNLRSTYKSLLPAYQQYVKSELLPCLGASDRHIRSTAGTIISVVVQLGGVSGWPELLQALVTCLDSNDLSHMEGAMDALSKICEDIPQVLDAEVPGLAERPINIFLPRLFRFFQSPHASLRKLSLGSVNQYIMLMPTALYVSMDQYLQGLFILSNDPNSEVRKLVCAAFVQLIEVRPSFLEPHLRNVIEYMLQVNKDTDDEVALEACEFWSAYCDAQLPPENLREFLPRLIPILLSNMAYADDDESLVEAEEEGSQPDRDQDLKPRFHVSRFHGSDEIDDDDDDVVNTWNLRKCSAAALDILSNVFGDEILPTLMPIVQAKLSTGGDDAWKEREAAVLALGAIGEGCINGLYPHLAEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGIGHPKGYDQFDSVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELAPRLEIILKHLMLAFGKYQRRNLRIVYDAIGTLAEAVGGELNQPVYLDILMPPLIEKWQQLSNSDKDLFPLLECFTSIAHALGTGFSQFAEPVFKRCINIIQTQQFAKADPVAAGVQYDKEFIVCSLDLLSGLAEGLGSGIESLVSQCSLRDLLLHCCVDDAPDVRQSAFALLGDLARVCPIHLHPRLSEFLEAAAKQLEISKVKEAISVANNACWAIGELAVKVRQEVSPIVLTVISCLVPILQHAEGLNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCTALSMIRDDVEKEDAFRGLCAMVKANPSGALSSLVYMCTAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3922 891 PANTHER IMPORTIN BETA 7 889 IPR040122 GO:0006606
Amo19g3922 891 Pfam HEAT-like repeat 406 459 - -
Amo19g3922 891 SMART IBN_N_2 36 104 IPR001494 GO:0006886|GO:0031267
Amo19g3922 891 ProSiteProfiles Importin-beta N-terminal domain profile. 36 104 IPR001494 GO:0006886|GO:0031267
Amo19g3922 891 PANTHER TRANSPORTIN 1 ISOFORM 1 7 889 - -
Amo19g3922 891 Pfam HEAT repeat 666 694 IPR000357 GO:0005515
Amo19g3922 891 SUPERFAMILY ARM repeat 7 881 IPR016024 -
Amo19g3922 891 Gene3D - 4 891 IPR011989 -
Amo19g3922 891 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3922 Amo-Chr19 154953281 154964167 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3922 K18752 - gmx:100792702 1659.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3922 19 154953281 154964167 Amo19g3922 19 154953281 154964167 ECH