Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3919 ATGGTGAATATGGGTGGCTTCTGTCACCATCATCATCACACCATTTTCCTCAGCTCCACCAACACCACTCCCCCTGTTCACCATAAACGCTCCAAGAAACCCACCACCGCCTTTGCTCACTCCCACAACTATTCTAGAGCTTCATCATCTTCTTCTTTGTCTCGGCTTTCAAGGGCTCTAGTTGATACTGTGTCATCTGGGTCTATGCAACATGCACACTCCCTGTTCGACAAAATGTCTCACTCAAACACCTTTCATTGGAACCTCATGATAAGAGGCTATACGGATAACGGCTTCTTTCTACATGCTCTCAACTTGTATCTCACAATGCGCTTTCAAGGGGTTCCCGCCGATCATTTTACATACCCTTTTGTCCTCAAAGCTTGTGGTGGCTTGTTGGATTTCCGAGAAGGCGAAAAGGTTCATGGGAGCTTGTTTAAAATGGGTTTGGCCAAGGATCTTTATGTTTGCAATTCACTCATTGGGATGTATGGCAAGTTTGGTCATATTGATTCTGCAGTCAAGGTGTTTGAGGAAATGCCTCTTCCAGACTTGGTTTCTTGGAACTCAGTGGTTGGCGCGTATTTGATGGTCCAACAATATTTCACCTCTTTGAAGTGGTTTAGGACGATGTTCCAGGCTGGGATTCGCCCCAATAAGTTCAGCTTAATCAATGCGCTGGAGGCATGTTCTCACTGTTTTTATAATTTATGGGGAAGAGAAGTGCATTGCTATGCGCTCAAGATGGGTTTTGAATCAGATGTTATGATCCAGACATCGCTTCTTGACATGTACAGCAAGTGTAGGTTGTTAAGTTATGCAGAGAGGATTTTCGATGGTATATCTTCGAAGAACATTGTTGCTTGGAATGCAATGATTGGTGCTTATGTTCTGAACGGTCAACCAATTCAGGCTTTTGATTCTTTGGAGAATATACTCAAGGATGATAAATTGGCTGTTGATAATGTCACACTCATAAACCTGCTTCCTTCCTGTGCACAACTAGGAGCTGTTTTGCAGGGTAAGACTATCCATGGACTTGCCATAAGGAAAGGCTTTCTACCTCATCCGGTATTGGAAACAGCTCTGCTCGACATGTATGGCGAGTTTGGAATACTGAAGTTGGCAGAGGTAACCTTCGATCAAATGATGGATAAGAACTTGATAACATGGAATGCCATGATTGCTGCATATGTGCAGAATGATTGGTACAGGAAGGCCTTAAAGCTATTTGAAGAACTTTTGAGTGGGTATCTTAAACCGGATACAGTTACTATCGCAAGCATCCTTCCTGCCTATGCAAATTTAGCATCATTAAGGGAGTGCAGACAAATTCATGGTTATATCTTGAAATTGAATTTTCACTTGAATAATTTTGTTTCAAATTCAATTATGTATATGTATGCAAGTTGTGGAGATCTAGCGTTAGCATGCAGGATTTTTCGTGAAATGGCTTGTAGAGATATAATATCATGGAACACTATCATAATGGCTTATGCAATTCATGGTATGGGGAGAATGTCTATTGAACTATTTTCCGAGATGAAGAGTAGAGGAATTGAGCCTAATGATAGCACCTTTGTTTCCTTGTTATCTGCTTGTAGCAATTCTGGCCTGGTAAAAGAAGGCTGGGCATACTACAACTCGATGAAATTAGACTACGGAATAGAGCCTAAAATAGAGCATTATGGATGTATGCTTGATCTTATTGGTAGAACTGGCAACTTGGATCAAGCCCTGAGTTTTATAGAAGAAATGCCACTGTTGCCTACAGCACGCATATGGGGATCACTGCTAAATGCTAGCAGAAACAAAGGAAACATAGAATTGGCTGAACTCGCTGCCGAAAGGATATTGTCAATAAAGCATGACAATACTGGATGTTACATCTTGCTTTCAAACATGTATGCTGAAGCTGGGAGATGGGAGAAGGTGGAACACATAAAGTCTATTATGAAGAAAAAAGGATTAGAAAAAACCCTGCCTTGCAGCACAGTTGAAACCAAATTTAGGCTGCACAGGTTTACTAATAAACAGAGATCTCATGATGAATCAGCAATGGTTTATGAAGTTCTAGATATAATTTCAAGGAACATGGATCATGGAAAATGCATCCATAGTGCTACAAAATTCAAGCCATCAGAGTTGGCTAGTAAAAAGGCAAACTCGCCTGAGAACCACAGCGTACGATTGGCCATATGTTTTGGACTCATCTCCACGAAACTTGGAGATCCTGTTCTTGTAAGAAAAAACACAAGAATATGTGAAGATTGTCATGTTGCTGCAAAGAGGATCTCTCATATAACTAGGAGAGAAATTATAGTGGGAGACCCCAAAGTCTTCCACCACTTCAGAGATGGCTACTGCTCCTGTGGTGACTACTGGTAA 2388 0.4129 MVNMGGFCHHHHHTIFLSSTNTTPPVHHKRSKKPTTAFAHSHNYSRASSSSSLSRLSRALVDTVSSGSMQHAHSLFDKMSHSNTFHWNLMIRGYTDNGFFLHALNLYLTMRFQGVPADHFTYPFVLKACGGLLDFREGEKVHGSLFKMGLAKDLYVCNSLIGMYGKFGHIDSAVKVFEEMPLPDLVSWNSVVGAYLMVQQYFTSLKWFRTMFQAGIRPNKFSLINALEACSHCFYNLWGREVHCYALKMGFESDVMIQTSLLDMYSKCRLLSYAERIFDGISSKNIVAWNAMIGAYVLNGQPIQAFDSLENILKDDKLAVDNVTLINLLPSCAQLGAVLQGKTIHGLAIRKGFLPHPVLETALLDMYGEFGILKLAEVTFDQMMDKNLITWNAMIAAYVQNDWYRKALKLFEELLSGYLKPDTVTIASILPAYANLASLRECRQIHGYILKLNFHLNNFVSNSIMYMYASCGDLALACRIFREMACRDIISWNTIIMAYAIHGMGRMSIELFSEMKSRGIEPNDSTFVSLLSACSNSGLVKEGWAYYNSMKLDYGIEPKIEHYGCMLDLIGRTGNLDQALSFIEEMPLLPTARIWGSLLNASRNKGNIELAELAAERILSIKHDNTGCYILLSNMYAEAGRWEKVEHIKSIMKKKGLEKTLPCSTVETKFRLHRFTNKQRSHDESAMVYEVLDIISRNMDHGKCIHSATKFKPSELASKKANSPENHSVRLAICFGLISTKLGDPVLVRKNTRICEDCHVAAKRISHITRREIIVGDPKVFHHFRDGYCSCGDYW* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3919 795 Gene3D Tetratricopeptide repeat domain 240 343 IPR011990 GO:0005515
Amo19g3919 795 Gene3D Tetratricopeptide repeat domain 344 446 IPR011990 GO:0005515
Amo19g3919 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Amo19g3919 795 Pfam PPR repeat 86 114 IPR002885 -
Amo19g3919 795 Pfam PPR repeat 287 310 IPR002885 -
Amo19g3919 795 Pfam PPR repeat 562 586 IPR002885 -
Amo19g3919 795 Pfam PPR repeat 462 487 IPR002885 -
Amo19g3919 795 Pfam PPR repeat 156 180 IPR002885 -
Amo19g3919 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Amo19g3919 795 Pfam DYW family of nucleic acid deaminases 724 795 IPR032867 GO:0008270
Amo19g3919 795 Gene3D Tetratricopeptide repeat domain 504 701 IPR011990 GO:0005515
Amo19g3919 795 Gene3D Tetratricopeptide repeat domain 90 238 IPR011990 GO:0005515
Amo19g3919 795 SUPERFAMILY TPR-like 382 644 IPR011990 GO:0005515
Amo19g3919 795 Pfam E motif 607 667 IPR046848 -
Amo19g3919 795 Pfam PPR repeat family 488 535 IPR002885 -
Amo19g3919 795 Pfam PPR repeat family 386 434 IPR002885 -
Amo19g3919 795 MobiDBLite consensus disorder prediction 19 43 - -
Amo19g3919 795 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 60 789 - -
Amo19g3919 795 TIGRFAM PPR: pentatricopeptide repeat domain 87 118 IPR002885 -
Amo19g3919 795 TIGRFAM PPR: pentatricopeptide repeat domain 490 523 IPR002885 -
Amo19g3919 795 TIGRFAM PPR: pentatricopeptide repeat domain 389 417 IPR002885 -
Amo19g3919 795 TIGRFAM PPR: pentatricopeptide repeat domain 155 180 IPR002885 -
Amo19g3919 795 TIGRFAM PPR: pentatricopeptide repeat domain 526 558 IPR002885 -
Amo19g3919 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Amo19g3919 795 PANTHER BNAANNG11600D PROTEIN 60 789 - -
Amo19g3919 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3919 Amo-Chr19 154941528 154944201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3919 66 795 Glycoside Hydrolase AT3G49170 31.763 1.87e-135 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3919 - - aip:107619622 1562.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3919 19 154941528 154944201 Amo19g3919 19 154941528 154944201 ECH