Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3914 ATGAACAAGAGGCCCAGAACCACCCTCGACAAGCCTCTTCTCGATCTCTGCCATCGAGAGCTTGGTCAGATTTCCAACCGCAATTTCGCTCACCGTCTTGCCGCTTCCGAGGACCTTGTGCTTCGGCTTGATGTATTGAGGAAGCTGGAAAAGCATAGAGGGTGTGTCAACACAGTTTGCTTCAATGCAGATGGTGACATCTTGGTGTCTGGTTCTGATGACCGCAGGGTCATTCTTTGGGACTGGGAAACTGGCCATATTAAGCTCTCTTTCCATTCTGGTCACACTAACAATGTTTTCCAGGCTAGGATCATGCCCCATTCCGATGATCGAAGCATTGTCACCTGCGCTGCTGATGGACAGGTGAGACATGCCCAAATTCTTGAACGTGGCAGAGTGGAAAATAAGTTGCTGGCCAAGCATCAAGGACGGGCTCATAAGATGGCTATTGAGCCTGGTAGCCCTCATATATTTTACACCTGTGGTGAAGATGGATTAGTACAGCATTTTGATCTGAGAACTGGCACCGCAACAGAACTCTTTACGTGCCAGCCAATTAAGGACAGATGGGATTACATTCCAGTCATCCATCTTAATGCAATTGCAATTGATCCAAGGAATCCAAATCTGTTTGCAGTTGCTGGGTCTGACGAGTATACTCGACTTTATGATATTCGCAAATATAAGTGGGATGGATCCTCCGATTTTGGCCAGCCAGTAAATTTCTTCTGCCCTCCACACTTGATTGGTGATCAACGAGGAGTTGGAATAACAGGCTTGGCATTTTCTGAACAGAGAGAGCTACTAGTATCATACAATGATGAGTATATTTATCTTTTTACACAAGATATGGGCCTGGGGCCTAACCCTGATCCCGGTTCCCCTGTATCTATGAACAGTGATTCAAGTGAAATGGGAGGTAGTCTTGGCTCTGCAGCCTCATTGTCAAACATTTCTGGCTCTGCTGATGAGAAAATCACTCCACAAGTTTTTAAGGGACACAGGAATTCTGAGACAGTGAAGGGTGTTAACTTTTTTGGGCCCAAGTGTGAGTATGTGGTAAGCGGGTCAGATTGTGGTCGGATTTTCATTTGGAGAAAGAAAGATGGGCAGCTTATTCGTGTCATGGAAGCGGATAAGAATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGCGGAATTGAGTATGACATCAAGATGTGGACTCCAAAGGCACACGAGAAAGCTACTTTGCCCAAAAACATTGAGCAGGTTCTCTTGTTTGATCCAATTCATTGGTTTATTGATGATACTACCGATGACGACGATGAGGAGGATGATGACAGCGATGTTGATGAGGATGAGGATGAGGATGATGATATGTTTGACGACGACGATATGTTTGATGATGACAATGATCTTTATGACGAGGATGATGATGATGGTTCTGATGATGACGGTGGCAATAGTGACGAATGTGTTGATGATGCAAATGTTGACACTGGTGATTTTAGTGATGATTGTGATGACGATGACAATGACAATATGGGTGGTGGTGTTGATGATAATAATGATGACAATCGCAATGATGATAATTTTGATGGTGGTTGTAATGCTGGAAATTTATGA 1626 0.4422 MNKRPRTTLDKPLLDLCHRELGQISNRNFAHRLAASEDLVLRLDVLRKLEKHRGCVNTVCFNADGDILVSGSDDRRVILWDWETGHIKLSFHSGHTNNVFQARIMPHSDDRSIVTCAADGQVRHAQILERGRVENKLLAKHQGRAHKMAIEPGSPHIFYTCGEDGLVQHFDLRTGTATELFTCQPIKDRWDYIPVIHLNAIAIDPRNPNLFAVAGSDEYTRLYDIRKYKWDGSSDFGQPVNFFCPPHLIGDQRGVGITGLAFSEQRELLVSYNDEYIYLFTQDMGLGPNPDPGSPVSMNSDSSEMGGSLGSAASLSNISGSADEKITPQVFKGHRNSETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKDGQLIRVMEADKNVVNCIESHPHTMVLASSGIEYDIKMWTPKAHEKATLPKNIEQVLLFDPIHWFIDDTTDDDDEEDDDSDVDEDEDEDDDMFDDDDMFDDDNDLYDEDDDDGSDDDGGNSDECVDDANVDTGDFSDDCDDDDNDNMGGGVDDNNDDNRNDDNFDGGCNAGNL* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3914 541 MobiDBLite consensus disorder prediction 289 311 - -
Amo19g3914 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 81 - -
Amo19g3914 541 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 9 423 - -
Amo19g3914 541 MobiDBLite consensus disorder prediction 435 518 - -
Amo19g3914 541 Pfam WD domain, G-beta repeat 46 81 IPR001680 GO:0005515
Amo19g3914 541 Pfam WD domain, G-beta repeat 329 365 IPR001680 GO:0005515
Amo19g3914 541 MobiDBLite consensus disorder prediction 435 541 - -
Amo19g3914 541 Gene3D - 36 410 IPR015943 GO:0005515
Amo19g3914 541 SUPERFAMILY WD40 repeat-like 41 407 IPR036322 GO:0005515
Amo19g3914 541 SMART WD40_4 176 224 IPR001680 GO:0005515
Amo19g3914 541 SMART WD40_4 131 171 IPR001680 GO:0005515
Amo19g3914 541 SMART WD40_4 369 408 IPR001680 GO:0005515
Amo19g3914 541 SMART WD40_4 84 126 IPR001680 GO:0005515
Amo19g3914 541 SMART WD40_4 241 281 IPR001680 GO:0005515
Amo19g3914 541 SMART WD40_4 42 81 IPR001680 GO:0005515
Amo19g3914 541 SMART WD40_4 324 366 IPR001680 GO:0005515
Amo19g3914 541 MobiDBLite consensus disorder prediction 293 311 - -
Amo19g3914 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Amo19g3914 541 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 9 423 IPR045151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3914 Amo-Chr19 154901290 154905230 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3914 K11804 - gmx:100794236 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3914 19 154901290 154905230 Amo19g3914 19 154901290 154905230 ECH