Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3619 ATGGCTTCCAACAAGAGTAGTAGTAGTACTCATCAAGCATTAACATTGCTCCTGTTCTTCCTCCTCACCCTCTCCTCTGCGCATGCCAAAGGTGGCATAGCCATCTACTGGGGCCAGAACAATGGCGACGGTACCTTAACCTCCACATGTGACACCGGAAACTACGAGATTGTGCTCCTCGCCTTTCTCTACACTTTCGGTTGTGGCAGAACTCCAGATTGGAACTTTGCTGGCCACTGTGGGCCATGGTCCCCTTGTGACAAACTACAACCAGAAATCGAACATTGCCAAAGAAACGGTGTGAAGGTGTTCCTCTCCCTTGGAGGAGCCGTTGGGCCCTACTCCTTATGCTCGCCGGAAGATGCCAAGAGCGTCTCCGACTACCTTTACAACAACTTCCTGAATGGCCAAAGGGGTCCATTAGGGAGTGTGTACCTTGATGGCATTGATTTCGACATTGAAGGTGGTTCAAACCTTTATTGGGATGATTTGGCTAGAGAACTCGATACACGCAGAAAGCAAGACAGGTACTTTTACTTGTCGGCAGCACCACAATGTTTCTTCACAGATTACTACCTTGATACCGCCATTAGAACTTGGCTTTTCGATTACKTKTTCYTCCAYTTCTACAACAACCCTCCATGCCAATATAGTAACGGCGACGCATCTTTGCTCTTATCTTCTTGGAATACATGGACCTCCTATGTGAAGCTCAACAACACGGTGTTTATGGGGCTACCCGCTGCACCTGATGCAGCTCCCAGCGGTGGCTATATTTCACCGCAAGATCTATGTACTAAGGTTCTTCCAATCATCAAGCACACTCCTAACTATGGTGGCGTCATGCTATGGGATAGGTTCCGCGATGTTACTAACCACTACAGCGATCAAATCAAGGATTGTGTTAAAGTTGATGATAGTGTTAGGGTGTCACAGACTGTGATGGCAACGTTATCGAACACTGTATATGAATGTGTATCTGCAGCTTTCAACCGCATCATACCAAAACTGAGACCTTTTTAG 1023 0.4692 MASNKSSSSTHQALTLLLFFLLTLSSAHAKGGIAIYWGQNNGDGTLTSTCDTGNYEIVLLAFLYTFGCGRTPDWNFAGHCGPWSPCDKLQPEIEHCQRNGVKVFLSLGGAVGPYSLCSPEDAKSVSDYLYNNFLNGQRGPLGSVYLDGIDFDIEGGSNLYWDDLARELDTRRKQDRYFYLSAAPQCFFTDYYLDTAIRTWLFDYXFXHFYNNPPCQYSNGDASLLLSSWNTWTSYVKLNNTVFMGLPAAPDAAPSGGYISPQDLCTKVLPIIKHTPNYGGVMLWDRFRDVTNHYSDQIKDCVKVDDSVRVSQTVMATLSNTVYECVSAAFNRIIPKLRPF* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3619 340 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
Amo19g3619 340 PANTHER ENDOCHITINASE 12 299 - -
Amo19g3619 340 SUPERFAMILY (Trans)glycosidases 30 298 IPR017853 -
Amo19g3619 340 Gene3D Glycosidases 28 317 - -
Amo19g3619 340 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 31 305 IPR001223 GO:0005975
Amo19g3619 340 PANTHER III ACIDIC ENDOCHITINASE, PUTATIVE-RELATED 12 299 - -
Amo19g3619 340 CDD GH18_hevamine_XipI_class_III 31 300 IPR045321 -
Amo19g3619 340 Pfam Glycosyl hydrolases family 18 33 289 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3619 Amo-Chr19 151138101 151139252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3619 11 302 Glycoside Hydrolase AT5G24090 48.993 1.65e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3619 K01183 - gmx:547449 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3619 19 151138101 151139252 Amo19g3619 19 151138101 151139252 ECH