Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3504 GGTCTTAAGGAAGCTCCCTCAGTACAGCAATCGATCTCTAATGCTCTAATAGAAGCCCGGTACACAAGACTGTGTTCCACAAAGAGCATTTTGACGGTGAATGGAAGATTTCCAGGGCCAGCTATAAAAGTCTACAAGGGTGACACAATCTATGTTAATGTTCACAACAGGGGAAAAAATAACATCACTATACACTGGCATGGAGTGAAACAACCAAGAAATCCATGGACAGATGGTCCTGAATACATAACTCAATGCCCCATTCAACCAGGAAGGAGTTTCAGACAAAAGATAGTATTTTCAACAGAAGAAGGGACCTTATGGTGGCATGCTCATAGTGATTGGTCAAGAGCCACCGTCCATGGCCCAATCTATATCTATCCAAAGAAGAATAGTAGTGGCTATCCTTTTCCCAAACCTCACTATGAGGTCCCCATCATACTTGGAGAGTGGTGGAAGAGTGATCTCAACAAGGTCTTCACACAATTTATTAAAAGTGGAGGAGCGCCAAACAATTCTGATGCTGTCACCATTAATGGCCAACCTGGAGATCTCTATAATTGCTCAAAATCTGGGACATTCAAGTTAAATGTAGAGCATGGCAAGACCTACCATCTGCGCATAATTAATGCGGCAATGAATCTGATCCTGTTTTTCTCAGTCTCCAAACACAACCTAACACTGTTTGCTCATGATGCAATGTACACAAAGGAATTAACAACTTCTTACATTTGCATAGCTCCTGGTCAAACAATGGATGTATTATTGCATGCAAACCAAAACCCTAACAACAAATATTACATGGCTGCAAGGGCTTATTCAACTGGGGTTGGAGTTCCATTTGATAACTCCACAACCACAGCTATAATCCAATACAATAATAATAATAATAATAATGAAAATTCAACTCCTTCCTTTCCTTTTCTTCCAAGCCCTAATGACACAAAATCAGCTTTTGCTTTCATTAGAAGAATTAGGGGCTACCCTGAAGAAAACCCTTTTACATGCCCTTTAAATATCAAAACTCACATACTTACCACAATTTCTGTGAACACTTTTCCATGCCCTAGAGGCCGATCACCATCCTCATGCCAAGCACCGAATTCGACGATTTTCGCCGCCAGCATGAACAACATAAGCTTTGTAACCCCACGCACTGATATCCTGGAAGCCTACTACTACCACATCAATGGAGTTTATAGAAAGGGTTTTCCGAGTTTCCCGCCATATGTGTTCAACTTCACTGGGGATTACTTGCCTCTTGAACTCAACATACCAAAGAGAGGGACAAAGGTTAAGGTTTTGAAGTACGGTTCAACGGTGGAGCTTGTTTTCCAAGGGACCAACTTGGTTGCTGGCATAGACCATCCAATGCATATACATGGATTCAGTTTTCATGTTATTGGTTATGGTTTTGGGAATTTCAACAAGAGCGTGGACCCCAAGAATTATAATCTTGTTGATCCTCCTCTTCAGAATACTGTGAGAGATGCTTCGTTCACAAAGCTTTGCAGCACAAAGAATATCTTAACAGTAAATGGAGAATTTCCAGGGCCAACATTGTATGTTACAAAAGGAGAAAGCATAATTGTTGATGTGTATAACAGAGCTAACTATAACATCACCATTCACTGGCATGGAGTGAACCAACCAAGATATCCATGGTCTGATGGCCCTGAATTCATCACTCAGTGTCCCATTCAACCTGGTGCTATGTTCTCTCAAAAGGTTATCTTTTCTGAAGAGGAAGGCACACTTTGGTGGCATGCTCATAGTGATTGGTCTCGTGCTACTGTTCACGGTGCTATTGTCATTCAACCCAAGCCTGGACATACATATCCATTTCCAAAACCACACAAAGAGGTTCCCATTGTACTAGGTGAATGGTGGAAGGAAGACATTGTCCAAGTTTTCAATAACTTTGAAACGGGGGGAGGAGATCCTCTTGCTTCAGATGCTTATACTATCAATGGCCAACCTGGTGATCTTTATAATTGCTCTAACAACGAAACCTTCAAAGTAAATGTGGAACATGGCAAGACATATCTTCTGAGAATGGTGCATGGTGGAATGCAAGACCTTCTGTTCTTTGCAATTGCAAAGCACCAATTGACAGTGGTGGGAAGCGATGGAAGCTATGTGAAGCCATTCAAAGTAGAATACATAACAATATCACCAGGTCAAACCATGGATGTGTTGCTTGAAGCTAATCAACCTTTGGATCGTTATTACATGGCTGCCAAAGTGTATTCAAGTGCTACCAATGTTTCATTTGACACCACAACCACCACTGCCATTGTGCAATACAAAAAGGGAAAACACATAATTCCATCGTTTTCATCAAGAACCCCTTACATGCCTTCACTTCCATCTTCCAATGACACCAATGCATCTATCAACATGATAAGTCAAATGAGAAGCTTAGCAGATGAAGCACATCCAATTGAGGTGCCATTGAACATAAGCACCAACCTTGTAAATAACATAAGCTTCCAATTGCCATCGGGAAACAACATTTTGAATGCTTACTATAACCACCTTCAAGGTGTATATACACAAGATTTTCCAGACGTGCCACCAGAACTATTTGATTTCACTGCTTCCGATTTGTCCCCATTTCTTAGAACTCCATCGGTAGATACAGAGGTGAAGGTGGTTGAGTATGGGTCCACGGTGGAGCTTGTTCTTCAAGGGACTAATTTGCTGGCTGGTACTGAGCATCCAATGCACTTGCATGGTCATAGTTTCTATGTAGTTGGATGGGGATTCGGAAACTTTGACAAAGACAAAGATCCTCTCACATATAATCTTGTTGATCCTCCTTATCAGAATACCATCGCTATACCCAAAAATGGATGGGTAACTATAAGATTCAAGACACAAAATCCAGGTGTGTGGTTCATGCATTGCCACTTAGAGCGACATGTGAGTTGGGGAATGGCTATGACTTTCATTGTCAAAAATGGAAAGAATCCTGAAGAGAAGATGTTGCCACCACCACGAGACATGCCACACTGTTAA 3021 0.4141 GLKEAPSVQQSISNALIEARYTRLCSTKSILTVNGRFPGPAIKVYKGDTIYVNVHNRGKNNITIHWHGVKQPRNPWTDGPEYITQCPIQPGRSFRQKIVFSTEEGTLWWHAHSDWSRATVHGPIYIYPKKNSSGYPFPKPHYEVPIILGEWWKSDLNKVFTQFIKSGGAPNNSDAVTINGQPGDLYNCSKSGTFKLNVEHGKTYHLRIINAAMNLILFFSVSKHNLTLFAHDAMYTKELTTSYICIAPGQTMDVLLHANQNPNNKYYMAARAYSTGVGVPFDNSTTTAIIQYNNNNNNNENSTPSFPFLPSPNDTKSAFAFIRRIRGYPEENPFTCPLNIKTHILTTISVNTFPCPRGRSPSSCQAPNSTIFAASMNNISFVTPRTDILEAYYYHINGVYRKGFPSFPPYVFNFTGDYLPLELNIPKRGTKVKVLKYGSTVELVFQGTNLVAGIDHPMHIHGFSFHVIGYGFGNFNKSVDPKNYNLVDPPLQNTVRDASFTKLCSTKNILTVNGEFPGPTLYVTKGESIIVDVYNRANYNITIHWHGVNQPRYPWSDGPEFITQCPIQPGAMFSQKVIFSEEEGTLWWHAHSDWSRATVHGAIVIQPKPGHTYPFPKPHKEVPIVLGEWWKEDIVQVFNNFETGGGDPLASDAYTINGQPGDLYNCSNNETFKVNVEHGKTYLLRMVHGGMQDLLFFAIAKHQLTVVGSDGSYVKPFKVEYITISPGQTMDVLLEANQPLDRYYMAAKVYSSATNVSFDTTTTTAIVQYKKGKHIIPSFSSRTPYMPSLPSSNDTNASINMISQMRSLADEAHPIEVPLNISTNLVNNISFQLPSGNNILNAYYNHLQGVYTQDFPDVPPELFDFTASDLSPFLRTPSVDTEVKVVEYGSTVELVLQGTNLLAGTEHPMHLHGHSFYVVGWGFGNFDKDKDPLTYNLVDPPYQNTIAIPKNGWVTIRFKTQNPGVWFMHCHLERHVSWGMAMTFIVKNGKNPEEKMLPPPRDMPHC* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3504 1006 Gene3D - 495 614 IPR008972 -
Amo19g3504 1006 CDD CuRO_1_LCC_plant 494 607 IPR034288 GO:0005507
Amo19g3504 1006 Pfam Multicopper oxidase 856 989 IPR011706 GO:0005507|GO:0016491
Amo19g3504 1006 CDD CuRO_2_LCC_plant 144 292 IPR034285 -
Amo19g3504 1006 CDD CuRO_1_LCC_plant 18 128 IPR034288 GO:0005507
Amo19g3504 1006 ProSitePatterns Multicopper oxidases signature 2. 969 980 IPR002355 GO:0005507
Amo19g3504 1006 SUPERFAMILY Cupredoxins 18 153 IPR008972 -
Amo19g3504 1006 CDD CuRO_3_LCC_plant 850 989 IPR034289 GO:0005507
Amo19g3504 1006 CDD CuRO_2_LCC_plant 622 769 IPR034285 -
Amo19g3504 1006 SUPERFAMILY Cupredoxins 371 495 IPR008972 -
Amo19g3504 1006 Pfam Multicopper oxidase 495 608 IPR011707 GO:0005507
Amo19g3504 1006 Pfam Multicopper oxidase 20 130 IPR011707 GO:0005507
Amo19g3504 1006 ProSitePatterns Multicopper oxidases signature 1. 964 984 IPR033138 -
Amo19g3504 1006 TIGRFAM laccase: laccase 18 495 IPR017761 GO:0046274|GO:0048046|GO:0052716
Amo19g3504 1006 PANTHER LACCASE 826 1006 - -
Amo19g3504 1006 PANTHER LACCASE 496 826 - -
Amo19g3504 1006 PANTHER LACCASE 13 495 - -
Amo19g3504 1006 PANTHER MULTI-COPPER OXIDASE 826 1006 IPR045087 -
Amo19g3504 1006 PANTHER MULTI-COPPER OXIDASE 496 826 IPR045087 -
Amo19g3504 1006 PANTHER MULTI-COPPER OXIDASE 13 495 IPR045087 -
Amo19g3504 1006 SUPERFAMILY Cupredoxins 822 1006 IPR008972 -
Amo19g3504 1006 SUPERFAMILY Cupredoxins 495 632 IPR008972 -
Amo19g3504 1006 Gene3D - 818 1006 IPR008972 -
Amo19g3504 1006 Gene3D - 360 494 IPR008972 -
Amo19g3504 1006 SUPERFAMILY Cupredoxins 137 326 IPR008972 -
Amo19g3504 1006 Pfam Multicopper oxidase 144 295 IPR001117 -
Amo19g3504 1006 Pfam Multicopper oxidase 621 771 IPR001117 -
Amo19g3504 1006 Gene3D - 8 128 IPR008972 -
Amo19g3504 1006 SUPERFAMILY Cupredoxins 615 809 IPR008972 -
Amo19g3504 1006 Gene3D - 141 328 IPR008972 -
Amo19g3504 1006 Gene3D - 619 810 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3504 Amo-Chr19 148936431 148945911 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3504 K05909 - qsu:112034097 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3504 19 148936431 148945911 Amo19g3504 19 148936431 148945911 ECH
Amo19g3504 19 148936431 148945911 Amo19g3504 19 148936431 148945911 PCT