Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1102 ATGGCCTTTGCGAATGAAATCATGGCTTCTTCATCAAGAGTCCTTCTACGTAACAGTTTAAAACAGAATCAATCGCCATTCTTGGTAAGCCCTGTGTTGGTGAGGTTGAGGAAAGCTGTAAAGTTTCCTGTGGCAGCTTTAAGTGAAGATTTGCTGAGGGACCCTTCCTCTTCCTCCTCTTCCTCCTCTTCTTCTTCTTCATCTTCCACTTCGTCTTCTTCTACTACGTCTGTGCCTGTTCCTGTTTCCGTGGTACCCTCTGAGAAACCGGTGAAATTCAGAGTTAGAGCTGTGGTGACTGTGAGAAACAAGATCAAAGAAGGTTTTAAAGAGACTCTTGTGAAGCATTTTGATGCTCTTACTGACAATATTGGACAGAATATTGTTCTGGAACTTATTAGCACTGAGATTGATCCAAAAACGAAGGCGGCGAAGAAAAGCAACGAAGCAGTGCTGAAAGATTGGTCGAAGAAGATCAATGTTAAAGCAGAGAGAGTTAATTACACAGCGGAGTACATGGTTGACTCTAATTTCGGAGAGCCAGGAGCAATAACTGTGTCGAATAAACATCAACAAGAGTTCTTCTTGGAATGCATAACAATTGAAGGGTTTGCCACTGGACCTGTTCATTTCCCTTGCAATTCATGGGTACAAGCACGAAAAGATCATCCTGGAAAAAGGATATTCTTTTCCAACAAGCCCTACTTGCCTGGAGATACACCTGCTGGTCTTAGATTTTTGAGGGAAAAGGAGCTGAGGAATCTCAGAGGCGATGGAAAAGGAGTTAGAAACTTGTCTGATAGAATATATGACTTTGATACATACAATGATCTTGGAAACCCAGACAGAGCACCTGAGTTTGCAAGACCAACAATTGGAGGATCTGAGCAGTATCCATACCCAAGACGGTGTCGTACTGGCCGTCTCCCATCTGACACTGACATGTTTGCAGAGAGCCGTTTAGAGAAACCAAATCCGATGTACGTCCCGAGGGACGAACGATTTGAAGAGTCTAAGCAGAACACATTTTCTGTGAAGAGACTCAAGGCTGTTCTCCATAACTTGATTCCTGGGCTTAAAGCTAGTATCTCTGCTGATAATCAAGATTTCAATGATTTCTCAGATGTTGATGGTCTTTACAGTAAAGGGTTACTGATTCAGTTGGGTTTACAAGATGATGTTTTAAAGAAACTTCCTTTGCCAAATGTGGTTAGCAAGATCCAGGAATCAAGCCAGGGACTTCTTAAATATGACACTCCCAAGATTATATCCAAGGACAAATTTGCGTGGCTGCGAGATGACGAATTTGCCCGCCAAGCAATTGCAGGAGTCAACCCTATTGGCATTGAGAGGCTTCAAGTTTTTCCACCGGTTAGCAAGCTTGACCCGCAAATATATGGTCCCGAAGAGTCTGCTCTTAAAGAAGAGCATATTCTAAACCAACTCAACGGCATGACTGTGCAACAGGCAATAGATGAAAATAAGCTGTTCATAATAGATTATCATGATGTTTACCTTCCATTTCTTGAAAGGATTAATGCACTTGATGGTAGAAAAGCATATGCTACACGCACAATCTTTTTCTTGACACCGCTTGGTACTCTCAAGCCTGTGGCTATAGAACTTAGCCTGCCTCCGGCCGGGCCAAGTTCCCGGTCCAAACGCGTAGTCACACCTGCCATAGATGCAACTACCAATTGGATGTGGCAGCTTGCTAAGGCGCATGTTTGTGCCAATGATGCCGGGGTGCACCAACTTTACAACCATTGGTTACGCACACATGCTTGCATGGAACCATTTATTTTGGCTGCTCACAGGCAAATGAGTGCTATGCATCCGATTTTTAAGTTGTTAGATCCACACATGAGGTACACTTTGGAGATCAATGCCCTGGCTCGCCAGAGCTTAATCAATGCTGATGGAATTATTGAGAATTGCTTCACCCCTGGCCGCTACGCCATGGAAATTAGTTCTGCTTTCTACAAAAACTATTGGCGTTTTGACATGGATACTCTCCCTGCTGATCTCATTCGCAGGGGAATGGCGGAACCAGACCCATCCCAACCACATGGCCTAAAGCTTGTATTTGAAGACTACCCTTATGCTGCAGACGGTCTTTTGATCTGGTCAGCAATTGAAAACTGGGTCCGCACCTATGTGAACCATTACTACCCACATTCAAGCCTTATAATCAATGATAAAGAGCTTCAAGCATGGTACTCTGAGTCAATCAACGTGGGGCACGCAGATCGCAGCCACGAGAGCTGGTGGCCCACGTTGAACAACAGTGAGAATCTTGTCACCGTACTCACCACATTGATTTGGCTTGCGTCTGCTCAGCACGCTGCTCTTAACTTTGGCCAGTATCCTTATGGAGGGTACGTGCCGAATCGTCCCCCGTTGATGCGAAGATTGATACCGGATGAGAGTGATCCAGAATATGCCAGTTTCATTGCTGATCCACAGAAGTATTTTCTCAACGCCTTGCCTAGTTTGTTGCAAGCTTCGAAATACATGGCCGTGGTGGACACTCTCTCCACTCACTCCCCTGACGAGGAGTACTTGGGAGAGAGGCAGCAACCTTCCATTTGGTCCGGTGATGCTGAGATCGTCGAGGCCTTTTACGAGTTCTCGGCTTAA 2640 0.4504 MAFANEIMASSSRVLLRNSLKQNQSPFLVSPVLVRLRKAVKFPVAALSEDLLRDPSSSSSSSSSSSSSSTSSSSTTSVPVPVSVVPSEKPVKFRVRAVVTVRNKIKEGFKETLVKHFDALTDNIGQNIVLELISTEIDPKTKAAKKSNEAVLKDWSKKINVKAERVNYTAEYMVDSNFGEPGAITVSNKHQQEFFLECITIEGFATGPVHFPCNSWVQARKDHPGKRIFFSNKPYLPGDTPAGLRFLREKELRNLRGDGKGVRNLSDRIYDFDTYNDLGNPDRAPEFARPTIGGSEQYPYPRRCRTGRLPSDTDMFAESRLEKPNPMYVPRDERFEESKQNTFSVKRLKAVLHNLIPGLKASISADNQDFNDFSDVDGLYSKGLLIQLGLQDDVLKKLPLPNVVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPIGIERLQVFPPVSKLDPQIYGPEESALKEEHILNQLNGMTVQQAIDENKLFIIDYHDVYLPFLERINALDGRKAYATRTIFFLTPLGTLKPVAIELSLPPAGPSSRSKRVVTPAIDATTNWMWQLAKAHVCANDAGVHQLYNHWLRTHACMEPFILAAHRQMSAMHPIFKLLDPHMRYTLEINALARQSLINADGIIENCFTPGRYAMEISSAFYKNYWRFDMDTLPADLIRRGMAEPDPSQPHGLKLVFEDYPYAADGLLIWSAIENWVRTYVNHYYPHSSLIINDKELQAWYSESINVGHADRSHESWWPTLNNSENLVTVLTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFIADPQKYFLNALPSLLQASKYMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIVEAFYEFSA* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1102 879 Gene3D - 236 338 - -
Amo19g1102 879 PRINTS Plant lipoxygenase signature 227 248 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 266 282 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 367 388 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 454 473 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 842 856 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 299 318 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 521 545 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 415 431 IPR001246 GO:0016491
Amo19g1102 879 PRINTS Plant lipoxygenase signature 201 219 IPR001246 GO:0016491
Amo19g1102 879 Pfam PLAT/LH2 domain 145 230 IPR001024 GO:0005515
Amo19g1102 879 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 74 879 - -
Amo19g1102 879 SMART LH2_4 93 232 IPR001024 GO:0005515
Amo19g1102 879 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 234 879 IPR013819 GO:0016702|GO:0046872
Amo19g1102 879 CDD PLAT_LH2 93 232 IPR042057 -
Amo19g1102 879 MobiDBLite consensus disorder prediction 281 304 - -
Amo19g1102 879 ProSiteProfiles PLAT domain profile. 109 231 IPR001024 GO:0005515
Amo19g1102 879 Gene3D - 428 561 - -
Amo19g1102 879 PRINTS Lipoxygenase signature 584 601 IPR013819 GO:0016702|GO:0046872
Amo19g1102 879 PRINTS Lipoxygenase signature 566 583 IPR013819 GO:0016702|GO:0046872
Amo19g1102 879 PRINTS Lipoxygenase signature 604 624 IPR013819 GO:0016702|GO:0046872
Amo19g1102 879 PANTHER LIPOXYGENASE 74 879 IPR000907 GO:0016702|GO:0046872
Amo19g1102 879 ProSitePatterns Lipoxygenases iron-binding region signature 2. 611 621 IPR020834 GO:0016702|GO:0046872
Amo19g1102 879 SUPERFAMILY Lipoxigenase 237 878 IPR036226 -
Amo19g1102 879 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 93 235 IPR036392 GO:0005515
Amo19g1102 879 Pfam Lipoxygenase 244 878 IPR013819 GO:0016702|GO:0046872
Amo19g1102 879 Gene3D - 563 879 - -
Amo19g1102 879 ProSitePatterns Lipoxygenases iron-binding region signature 1. 584 598 IPR020833 GO:0016702|GO:0046872
Amo19g1102 879 Gene3D - 339 427 IPR027433 -
Amo19g1102 879 Gene3D PLAT/LH2 domain 74 235 - -
Amo19g1102 879 MobiDBLite consensus disorder prediction 52 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1102 Amo-Chr19 20059466 20067507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1102 1 879 Acyl Lipid Metabolism Gene Families AT1G17420 69.966 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1102 K00454 - gmx:100793614 1475.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1102 19 20059466 20067507 Amo09g0612 09 8857585 8871882 hybridization