Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1044 ATGGCTTACGCATCTCGTCTTCTCAATCATTCTCGAAAGTTGAGAAATGCTTCGAACTTGGTACACCATGACCCTGCCCTTTTGGTTCGTTGGTTTTCCAGCGATGCTCAAACCTCTATCAGCAGAAAAAGCGATTTGTGGAAAATGCGGTCCCAGGGTTATATAACTTCAACAAGAAACACTGTCTCTGGAACAGTCCCGAATTTCACTAAGAGAAACCTCTCTGTGGCTACCATGAAAATGGATTCCATTGGTGGATCCTTGTTTAATGGAGGGATTTCACGAGGTTCACACGTCCAGACAAGGAGAGGTTATGCATCAGCAGCAGATCTCCCTCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCAACAATGACAGAGGGTAACATTGCTAGATGGTTGAAGAAAGAAGGTGATAAAGTCTCMCCAGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACTGTTGAAATGGAATGCATGGAGGAAGGTTATCTTGCAAAAATAATACGTGGGGATGGGGCAAAAGAAATTAAAGTTGGTGAGGTAATCGCTATAACTGTTGAAGAAGAGGGGGATATTGCGAAGTTTAAAGATTACCAACCTTCAGCATCAGAGCCTGCTACTGCTGCCCCTAAAGAAAAATCTGCTGCTCCTCCACCAAAGAAACAGGCGGTTGAGGAACCTACCCGAGAACCTGAGCCAAAGGTTTCCAAACCTAWTGCACCACCACCTTCAGGAGATCGCATTTTTGCTAGTCCTCTGGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCACTCTCAAGCATTAAAGGAACAGGACCAGAAGGGCTCATTGTCAAGGGTGACATTGATGATTACTTGGCTTCTGGGGCTAAAGAAGTTTCAGCACCATCAAGGGCAAAGGTTGCAACAGATGCAGCATTGGATTATACCGATGTTCCTATCTCTCAGATAAGGAAGATCACAGCTTCCCGTCTATTATTGTCAAAACAAACTATTCCTCATTACTATCTGACAGTAGATACATGTGTTGACAAACTCATGAGTTTGAGGACCAAACTCAATTCATTGCAAGAAGCCTCCGGTGGAGCCCGGATATCAGTTAATGACCTTGTCATCAAGGCTGCTGCTTTGGCTCTACGTAAAGTTCCTCAATGTAACAGTTCATGGACAGATGATTATATTCGCCAGTATCATAATGTGAACATTAATGTTGCAGTGCAGACTGATCATGGATTATTTGTTCCAGTCATCAGGGATGCAGACAAGAAAGGCCTCTCTGCAATTGGTGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGAACATTTACAGTGTCTAACCTGGGAGGGCCATTTGGTGTCAAGCAGTTCTGTGCAATCATCAATCCTCCTCAAGCAGGCATTCTTGCAGTTGGATCTGCTGAGAAGAGAGTTGTACCGGGTTCAGGTCCTGAAGAGTTCAAGTTTGCTTCCTTCATGGCTGTGACTCTTAGCTGTGATCATCGCGTAATAGACGGTGCAATTGGTGCTGAATGGTTAAAAGCATTCAAGGGCTATATTGAAAATCCAGAGTCCATGTTGTTGTAA 1632 0.4393 MAYASRLLNHSRKLRNASNLVHHDPALLVRWFSSDAQTSISRKSDLWKMRSQGYITSTRNTVSGTVPNFTKRNLSVATMKMDSIGGSLFNGGISRGSHVQTRRGYASAADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIIRGDGAKEIKVGEVIAITVEEEGDIAKFKDYQPSASEPATAAPKEKSAAPPPKKQAVEEPTREPEPKVSKPXAPPPSGDRIFASPLARKLAEEKNVPLSSIKGTGPEGLIVKGDIDDYLASGAKEVSAPSRAKVATDAALDYTDVPISQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTKLNSLQEASGGARISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTDHGLFVPVIRDADKKGLSAIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQAGILAVGSAEKRVVPGSGPEEFKFASFMAVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1044 543 SUPERFAMILY Single hybrid motif 113 208 IPR011053 -
Amo19g1044 543 Pfam e3 binding domain 252 286 IPR004167 GO:0016746
Amo19g1044 543 Gene3D - 247 297 IPR036625 GO:0016746
Amo19g1044 543 ProSiteProfiles Biotinyl/lipoyl domain profile. 114 190 IPR000089 -
Amo19g1044 543 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 116 543 IPR006257 GO:0004742|GO:0006090|GO:0045254
Amo19g1044 543 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 246 291 IPR036625 GO:0016746
Amo19g1044 543 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 312 543 IPR001078 GO:0016746
Amo19g1044 543 Pfam Biotin-requiring enzyme 116 188 IPR000089 -
Amo19g1044 543 Gene3D - 109 215 - -
Amo19g1044 543 MobiDBLite consensus disorder prediction 199 257 - -
Amo19g1044 543 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 57 543 - -
Amo19g1044 543 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 253 290 IPR004167 GO:0016746
Amo19g1044 543 CDD lipoyl_domain 115 188 - -
Amo19g1044 543 SUPERFAMILY CoA-dependent acyltransferases 312 543 - -
Amo19g1044 543 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 57 543 - -
Amo19g1044 543 Gene3D - 298 541 IPR023213 -
Amo19g1044 543 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 139 168 IPR003016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1044 Amo-Chr19 18232842 18242109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1044 1 543 Acyl Lipid Metabolism Gene Families AT1G54220 68.116 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1044 K00627 - gmx:100778218 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1044 19 18232842 18242109 Amo09g0550 09 7340199 7349504 hybridization