Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0681 ATGATAAATAATCAAAATCGAATTGTTGATACGCGTGTGCATTCCAAGGAATCTGAGAAAGAAATGGCGACGGAAGAAGAAGAAGTGGTGGCTGAAGTTGAAGCTGTGGAGGCCGTATATGGAACCGATTGCGTCCTTCTGGAATCCTTCCCTCCCCATTTTCTCATCTCCGTCAAGCCAAGAACCGCTGATGTTTCCTTCGAACAGTTTGTAGAAGCCACTGTAGACGTAAAAGCAGGCCCGCAGTATCCGGAAGAACCGCCTTCTGTCAATCTTGTGGATTCCAAGGGTCTGGATGAACAGAGACAAAAGTATCTGCTGAATTACATACGAAGTAAAGCTAACGAGCTCTCCCCTTCTTTAATGCTTGTAGCTCTTTGCGAGGAAGCAGCAGAGAAGCTGTCAACTATGAACCATCCTGATGGGGATTGTCCGTTGTGCTTGTTCCCTTTGGTCCCTGAAGATCAACAGAGTACAAAATTGCCTTTTATGAAGCTAATGTCTTGCTTTCACTGTTTCCACAGTGAATGCATCATTCAATGGTGGAACTGGCTTCAAACTTCTAAAGAAGCAGACTCTGCTTATTCAGCAAGTGCAACTACGCACCCTAACCGAGATAAAAATGGAAAATTGGAAGAGGGAGTTGGAAACTGCCCAGTCTGTCGTAAGCCTTTTGATGGAAAGGATTTGGATCATGTGCTTGACCTAGTTGACTCGCATTCTTCCCAATTGAGATTGGAAAATGATGAAGCCAATGATGAGGAAAACCTCCTTCAATCTGAGGATGAGATCATTAGGAGGAAGAAATTTGAAACCATCTTAAATTTACAGAAGGAGAACAATGGCTTGATTGAATCCAAGAGAGATATAGTAATAGTGCCCGGTATGTATCTTCCGCAATCACTAGCAGCGTCGAGCTCCACGCTAACGAAAGAATCTGATGAGCAACAAGAAAAGGATTCACCTGCAGTCGCGCCAGGAAAACATGAACCTAGCTCAAACAGGCCTAGCTCAAGTGGACATAGGAATTTTGGTGCAAGGAAGCAGAGAGCAGGTAACCCCCATTCTAATTCAACTGTAAGAAATCCAAGAAAACCAGCCCAACAGTGGGTTAGGAGAGATAATCCTAACCGAAAGCAATAA 1143 0.4401 MINNQNRIVDTRVHSKESEKEMATEEEEVVAEVEAVEAVYGTDCVLLESFPPHFLISVKPRTADVSFEQFVEATVDVKAGPQYPEEPPSVNLVDSKGLDEQRQKYLLNYIRSKANELSPSLMLVALCEEAAEKLSTMNHPDGDCPLCLFPLVPEDQQSTKLPFMKLMSCFHCFHSECIIQWWNWLQTSKEADSAYSASATTHPNRDKNGKLEEGVGNCPVCRKPFDGKDLDHVLDLVDSHSSQLRLENDEANDEENLLQSEDEIIRRKKFETILNLQKENNGLIESKRDIVIVPGMYLPQSLAASSSTLTKESDEQQEKDSPAVAPGKHEPSSNRPSSSGHRNFGARKQRAGNPHSNSTVRNPRKPAQQWVRRDNPNRKQ* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0681 380 ProSiteProfiles RWD domain profile. 31 137 IPR006575 GO:0005515
Amo19g0681 380 Gene3D Ubiquitin Conjugating Enzyme 15 139 IPR016135 -
Amo19g0681 380 SMART RWD2001b 31 137 IPR006575 GO:0005515
Amo19g0681 380 SUPERFAMILY UBC-like 26 134 IPR016135 -
Amo19g0681 380 MobiDBLite consensus disorder prediction 304 380 - -
Amo19g0681 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 238 IPR013083 -
Amo19g0681 380 MobiDBLite consensus disorder prediction 1 23 - -
Amo19g0681 380 MobiDBLite consensus disorder prediction 331 365 - -
Amo19g0681 380 SUPERFAMILY Rad50 coiled-coil Zn hook 204 267 - -
Amo19g0681 380 ProSiteProfiles Zinc finger RING-type profile. 144 222 IPR001841 -
Amo19g0681 380 PANTHER RING FINGER PROTEIN 25 25 368 IPR039133 GO:0061630
Amo19g0681 380 Coils Coil 241 261 - -
Amo19g0681 380 SMART ring_2 144 221 IPR001841 -
Amo19g0681 380 Pfam RWD domain 27 133 IPR006575 GO:0005515
Amo19g0681 380 SUPERFAMILY RING/U-box 137 226 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0681 K10640 - gmx:100791789 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0681 19 10580337 10587016 Amo19g0681 19 10580337 10587016 ECH