Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0641 ATGAGCAGTTCCCATGTGTTGACTCAGCCACAGCAGAGGCACTTACTTCACTCAACTACTTCAATCACCTCTTACGCATTTCGTCGAACACCTCGTACCCTCCTTCTCCGCTCCTCCTCTTCTTCTTCTTCAACCGCCTCTTCCTCCGCCCCCGACATCGACAAACCCACCGGAGCTGCTTCCAGGGCTGCTGGACGCAACCGCCGTGCCCCGGCGTCTCCGACCACTTCGACTTCCGATAGGGAGGCTGTTCGAGCCATTCGCTTGAAGAAGGTTGAAGAACTGAGAAGTAAAGGGCTTGATCCATATGCTTATGGATGGGAGAAAACTCACAGTGCTAATCAGCTGCAAGATATATATAGAGATCTGGGAAATGGTGAGGAAGCAAACGGTGAGAATGACCATGTATCAATTGCAGGAAGAATTGTTGCTAGAAGAGCATTTGGCAAGCTTGCTTTTTTGACACTAAGAGATGATTCTGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGATGACCAGTTTGAACAGTTGAAAGCTCATGTTGATATTGGTGATATACTAGGTGCAAGAGGTTCAATAAAACGCACAGAGAAAGGAGAACTTTCTGTGTGTGTCCTTTCCTTTGCAATCCTTACAAAATCTCTGCTTCCACTACCTGACAAATATCATGGCTTAACTGATATCGATAAACGCTATCGCCAAAGATACGTAGATATGATTGCAAATCCAGAGGTAGCAGATGTTTTCCGCAAAAGAGCAAAGACTATGTGCCTTACACTGGGTAGACACCAGAAGATGTTTAATCTTATCCCACATGACCTGCTTGTGCGCAAGCCTTCCATTAAAGATGTTGTATCAGAGATACGGAGAACAATGGATTCTTTAGGTTACATTGAAGTTGAAACCCCAGTTTTGCAGGGAGCAGCTGGGGGAGCCGAAGCCAGACCATTTATTACACATCATAATTCTCTTGGAAGGGACTTATATTTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTTGGTGGATTTGAAAAGGTATATGAGATTGGGCGAATATTTAGAAATGAAGGAATTTCAACTCGTCATAATCCTGAATTTACAACAATAGAGATGTATGAAGCATACTCAGACTACCAAAGCATGATGAATTTGGCAGAGGAGATTGTCACTCAATGTGCCCTAGCAGTTCTTGGGAAACTTACCCTAGATTATCAGGGAGTTGAGATATGTCTGGAGAGACCTTGGAGGAGGGAGACCATGCACAACCTTGTTAAAGAAGTTTCCGGCATTGATTTTAGTGAATTGGGATATGATCTTGAAGTTGCAAAGAAAGTTACTCTTAGTACCCTTGGAAACAATCTTGATGCCAAGGACAAAGCTTCGATTGAAGCTTGCCAATCTGTTGGCCATCTACTTAATGAGGTCTTTGAGGTTGTTGTAGAACCAAAGCTCATCCAACCTATATTTGTTTTAGACTATCCAATTGAAATATCTCCACTGGCCAAACCACACCGAAGAGGTCGCTTAGAGGATCAAGTTAGACAACATGAAAAGAAGAGAGCCGAGGCTGCTTCAAGAAATGCTGATAAGAAGGAAGGGACGGAAAACGAGGATGACTTATATGAAGTTACTCTTGATGACGACTTTCTAACAGCTTTGGAGTATGGAATGCCTCCAGCCTCTGGAATGGGACTTGGAATTGACAGGATCGTGATGCTTTTGACAAATTCTCCCAGCATTCGAGATGTAATAGCCTTTCCAGTATTGAAAGTCCAGCAATAG 1800 0.4339 MSSSHVLTQPQQRHLLHSTTSITSYAFRRTPRTLLLRSSSSSSSTASSSAPDIDKPTGAASRAAGRNRRAPASPTTSTSDREAVRAIRLKKVEELRSKGLDPYAYGWEKTHSANQLQDIYRDLGNGEEANGENDHVSIAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIDDQFEQLKAHVDIGDILGARGSIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKTMCLTLGRHQKMFNLIPHDLLVRKPSIKDVVSEIRRTMDSLGYIEVETPVLQGAAGGAEARPFITHHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTQCALAVLGKLTLDYQGVEICLERPWRRETMHNLVKEVSGIDFSELGYDLEVAKKVTLSTLGNNLDAKDKASIEACQSVGHLLNEVFEVVVEPKLIQPIFVLDYPIEISPLAKPHRRGRLEDQVRQHEKKRAEAASRNADKKEGTENEDDLYEVTLDDDFLTALEYGMPPASGMGLGIDRIVMLLTNSPSIRDVIAFPVLKVQQ* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0641 599 MobiDBLite consensus disorder prediction 36 84 - -
Amo19g0641 599 Pfam tRNA synthetases class II (D, K and N) 286 595 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Amo19g0641 599 PANTHER LYSINE--TRNA LIGASE 286 599 - -
Amo19g0641 599 PANTHER LYSINE--TRNA LIGASE 66 258 - -
Amo19g0641 599 Coils Coil 512 532 - -
Amo19g0641 599 PRINTS Lysyl-tRNA synthetase signature 296 306 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Amo19g0641 599 PRINTS Lysyl-tRNA synthetase signature 359 376 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Amo19g0641 599 PRINTS Lysyl-tRNA synthetase signature 341 354 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Amo19g0641 599 PRINTS Lysyl-tRNA synthetase signature 312 328 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Amo19g0641 599 PRINTS Lysyl-tRNA synthetase signature 492 508 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Amo19g0641 599 MobiDBLite consensus disorder prediction 512 544 - -
Amo19g0641 599 Hamap Lysine--tRNA ligase [lysS]. 87 598 IPR002313 GO:0004824|GO:0005524|GO:0006430
Amo19g0641 599 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 287 593 IPR006195 -
Amo19g0641 599 SUPERFAMILY Class II aaRS and biotin synthetases 287 595 IPR045864 -
Amo19g0641 599 Pfam OB-fold nucleic acid binding domain 136 210 IPR004365 GO:0003676
Amo19g0641 599 Gene3D - 81 222 IPR012340 -
Amo19g0641 599 SUPERFAMILY Nucleic acid-binding proteins 82 223 IPR012340 -
Amo19g0641 599 CDD LysRS_core 245 596 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Amo19g0641 599 MobiDBLite consensus disorder prediction 36 54 - -
Amo19g0641 599 Gene3D Bira Bifunctional Protein; Domain 2 224 262 IPR045864 -
Amo19g0641 599 CDD LysRS_N 135 242 IPR044136 GO:0000166
Amo19g0641 599 Gene3D Bira Bifunctional Protein; Domain 2 282 595 IPR045864 -
Amo19g0641 599 PANTHER LYSYL-TRNA SYNTHETASE 286 599 - -
Amo19g0641 599 PANTHER LYSYL-TRNA SYNTHETASE 66 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0641 Amo-Chr19 9926161 9933827 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0641 K04567 - gmx:100787720 876.7