Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0627 ATGTATGGTGGTGATGAAGTGTCTGCAATAGTAATTGACTTGGGCTCACACACATGTAAAGCTGGTTATGCTGGTGAAGATGCTCCCAAGGCTGTGTTTCCCTCTGTTGTGGGGGCAATTGATCAAATGGATATTGATGAAGCTGAGAATGGCGAAAAGAACTCCGAGTCTACTGCGGACGCCAAGAACAATGACAAACCCAAGGGAAAGCGAAAGTTGTATGTGGGATCTCAGTCCTTGGGGTACCGCAGAGACCATATGGAGGTCGTGTCTCCGTTAAAGGATGGGATTGTTGCAGACTGGGACATTGTTGACAACATATGGGATCATGCCTTCAGGGAGTGCCTCTTGATTGATCCTAAAGAGCATCCAATGCTACTTGCAGAACCTTCTTCTAACACTCAACAGCAGAGAGAAAGGGCCGCAGAGCTTATGTTTGAGAAGTACAAAGCACCTGCATTGTTTTTGGCAAAGAATGCTGTTTTGACATCTTTTGCATCAGGGCGTGCTACGTCATTGGTTGTTGATTGTGGTGGAGGATCAACTACAGTTGCACCGGTACATGATGGCTATGTTCTTCAAAAGGCTGTGGCGACCTCTCCTATTGGAGGAGAATTTCTTACAGACTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATCGTGATAAAACCACGGTATTCTTTTAGGAGAAAGGAAATACGCCCTGGAGAGTTTCAGACTGTAGATATTGATTTTCCAAATACAACTGAAAGCTACAAACTCTACTCTCAGAGAGTGATTGCAAGTGATATCAAAGAATGTGTATGCCGTGCTCCAGATACTCCATATGATGATAGTGCATATTCAAACATTCCGATGACCCCATATGAGCTCCCTGATGGCCAGACAATTGAAATTGGATCTGATAGATTCAAGATTCCAGATGTTCTTTTCAATCCATCCCTAGTTCAGACAATTCCTGGCATGGAGAGCTTTGCAGAAGTTGCTCCTTCCGTTCGTGGCCTACCCCAAATGGTTATAGAAAGCATTAACAAATGTGATGTAGACATTCGAAGAGAGTTATTTAGTAGCATACTGCTTGCTGGTGGCACAGCTTCAATGCAACAACTGAAGGAACGCCTTGAGAAGGATTTACTAGAGGAATCCCCTCAAGCTGCTAGAGTAAAAGTATTAGCGAGTGGAAACGCTACTGAAAGAAGGTTTAGTGTTTGGATAGGGGGTAGCATATTGGCTTCTCTTGGCTCCTTCCAGCAAATGTGGTTCTCCAAGTCCGAGTATGAAGAGCATGGAGCTTCATATATCCAAAGGAAGTGTCCTTAA 1320 0.4417 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDEAENGEKNSESTADAKNNDKPKGKRKLYVGSQSLGYRRDHMEVVSPLKDGIVADWDIVDNIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIVIKPRYSFRRKEIRPGEFQTVDIDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDDSAYSNIPMTPYELPDGQTIEIGSDRFKIPDVLFNPSLVQTIPGMESFAEVAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0627 439 Gene3D - 175 378 - -
Amo19g0627 439 MobiDBLite consensus disorder prediction 48 72 - -
Amo19g0627 439 Gene3D Actin; Chain A, domain 4 204 317 - -
Amo19g0627 439 PANTHER - 2 438 - -
Amo19g0627 439 SUPERFAMILY Actin-like ATPase domain 5 175 IPR043129 -
Amo19g0627 439 Pfam Actin 4 438 IPR004000 -
Amo19g0627 439 PANTHER ACTIN 2 438 IPR004000 -
Amo19g0627 439 Gene3D - 3 174 - -
Amo19g0627 439 Gene3D - 383 439 - -
Amo19g0627 439 PRINTS Actin signature 28 37 IPR004000 -
Amo19g0627 439 PRINTS Actin signature 162 181 IPR004000 -
Amo19g0627 439 CDD NBD_sugar-kinase_HSP70_actin 10 198 - -
Amo19g0627 439 SUPERFAMILY Actin-like ATPase domain 168 438 IPR043129 -
Amo19g0627 439 SMART actin_3 7 439 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0627 Amo-Chr19 9764630 9775181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0627 1 438 Miscellaneous Gene Families AT3G53750 37.868 1.46e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0627 K11340 - gmx:100785066 815.839