Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0608 ATGAACATTTTTGGGGCAAAGATAACAGGCACAGTTGTGCTAATGCAAAAGAATGTGTTAGATGTGAATAGCATAACTAGTCCTCAGGGTATTCTTGACACAGGCCTGGGGGGACTTACCTCACTTGTTGATACCCTCTCTTCTTTCTTGGGCTTTTCGGTCGCATTTCAATTGATTAGTGCTACTAAACCAGATTCAAGTGGCAAAGGAAAAGTTGGGAATACAGCTTATTTAAAAGGAATTATTGACAATTTGCCAACTTTGGGAGACCAACAAAATGCATTCAAGATTGAATTTGATTATGATAGTAACTTTGGGATTCCGGGAGCATTTTACGTAAAGAACTATATGTCAAACGAGTTCTTGCTTATTAGCTTGACTCTTGACGATATTCCAAATAATGTTGGAACCATCCACTTTGTTTGCAACTCCTGGATTTACAATGCCAAAAACTATCAATCTGATCGCATTTTCTTCGCCAACAATACATACCTACCAAGTAAAACACCAGGTCCACTAGTGTACTACAGAGACCTTGAATTGAAGAATTTAAGAGGAAATGGGACTGGGGAAAGAAAGGAATGGGAAAGAATATATGATTATGATGTTTACAATGATTTGGGTGATCCAGACAAAGGTGTGGAATATGCTCGTCCAGTTCTTGGAGGATCTTCTACTTATCCTTACCCTAGGAGGGGTAGAACTGGTAGAAAACCAACAAAAACAGATCCTAACACCGAAAGTAGAAGTGATAATTTCTATATTCCAAGAGATGAAGCCTTTGGTCACTTGAAATCGTCAGACTTCTTAGCTTATGGAATTAAATCAATATCCCAAGATGTAATCCCAGCTTTAAAATCAGTGTTTGACATAAATTTCACACCAAATGAGTTTGATAGCTTTGAAGAAGTTCATGATCTCTATGAAGGAGGGATTAAGCTACCCACAGATGTGATTAAGCAAATTACTCCTTTGCCTGTGGTCAATGAACTCCTTAGAACTGATGGTGAACAGTTCCTCAAGTTTCCTGTTCCTAAAGTTGTTCAAGTGAGTAAATCTGCATGGATGACTGATGTAGAATTTGCGAGAGAAATTCTTGCTGGCGTAAATCCTGGTTTAATTCGTTGCCTTCAAGAGTTTCCTCCAAAAAGTAAGCTAGACAGCGGAGTCTATGGTGATCATACAAGTACAATAACCAAGGAGCAAATAGAGCCCAATTTAGATGGGCTCACCATAGATGAGGCAATCCAGCAAAAGAAGGTGTTCATATTAGATGATCATGATGCAATATTTCCATATTTAAGGAGAATAAACTCAACTAATTCAAAGGCATATGCTACTAGAACCATCCTTTATTTGAAGAGTGATGGAACTTTGAAGCCCCTTGCAATTGAGTTAAGTTTGCCACACCCTGAAGGAGACCAATATGGTGCCATTAGTAAAGTCTACTTGCCTGCAATTGAAGGTGTTCAAAGTTACATTTGGCTTCTTGCCAAAGCTTATGTCATCGTCAATGATTCAAACGTTCATCAACTTATCAGCCACTGGTTAAACACTCATGCAGTTGTGGAGCCATTCGTGATAGCAAGTAACAGGCAGCTTAGTGTGCTTCACCCAATTTACAAGCTTCTATTTCCACATTATCGTGACACTATGAATATAAATGCTCTTGCCCGTAATCAACTTATCAATGCAGGTGGCATTATTGAACAAACTTTCTTGCCTTCGAAGTATGCCATGGAAATGTCTTCCATCATTTATAAAGATTGGGTTTTTACAGATCAAGCTCTCCCTTCTGATCTTATCAAGAGAGGAATGGCGATTGCGGATGCAAGTTCCCCGAACGGTGTTCGTCTTGTGATAGAGGATTATCCTTACGCCATGGACGGACTAGAAATCTGGGGAGCCATTAACACATGGGTCCAGGACTACGTTTCTTTATACTACACCTCAGACGACACAGTCAAGGGAGACCTCGAACTCCAACAATGGTGGAAAGAGCTTGTAGAGGTTGGTCATGGAGACAAGAAAGACGAGCCATGGTGGCCTAAGATGCAAACTCTCCAAGACCTAATTCAAACTTGCACCACACTCATATGGACCGCTTCGGCGCTTCACGCTTCCGTTAACTTCGGTCAGTATCCGTACGGCGGTTTCATCCTAAACCGACCAACTCTGAGTCGCAGGTTCATGCCGGAAGAGGGAAGTCCCGAGTACGATGAGCTTGTCACAAACCCTGAACGGGCTTACTTAAGAACGGTTACACCAAAGTTTCAAACTCTGATTGATCTTTCAGTTATTGAGATTTTGTCAAGGCATGCTTCTGATGAATACTACCTTGGTAACAGAGATAGTGCTGAGTTTTGGACCTCTGATGTTTATGCTTTAGAAGCTTTTAAGAAGTTTGGGAACAAGTTGGCGGAAATTGAAGGAATTCTGATTCAAAGGAACAATGATGTGAGTTTGAGAAACAGAGTTGGACCTGTTACTATGCCTTATACTCTGCTTTATCCTACAAGTGAAGCTGGGTTAACTTTCAGGGGAATTCCTAATAGTATCTCTATCTAG 2568 0.4054 MNIFGAKITGTVVLMQKNVLDVNSITSPQGILDTGLGGLTSLVDTLSSFLGFSVAFQLISATKPDSSGKGKVGNTAYLKGIIDNLPTLGDQQNAFKIEFDYDSNFGIPGAFYVKNYMSNEFLLISLTLDDIPNNVGTIHFVCNSWIYNAKNYQSDRIFFANNTYLPSKTPGPLVYYRDLELKNLRGNGTGERKEWERIYDYDVYNDLGDPDKGVEYARPVLGGSSTYPYPRRGRTGRKPTKTDPNTESRSDNFYIPRDEAFGHLKSSDFLAYGIKSISQDVIPALKSVFDINFTPNEFDSFEEVHDLYEGGIKLPTDVIKQITPLPVVNELLRTDGEQFLKFPVPKVVQVSKSAWMTDVEFAREILAGVNPGLIRCLQEFPPKSKLDSGVYGDHTSTITKEQIEPNLDGLTIDEAIQQKKVFILDDHDAIFPYLRRINSTNSKAYATRTILYLKSDGTLKPLAIELSLPHPEGDQYGAISKVYLPAIEGVQSYIWLLAKAYVIVNDSNVHQLISHWLNTHAVVEPFVIASNRQLSVLHPIYKLLFPHYRDTMNINALARNQLINAGGIIEQTFLPSKYAMEMSSIIYKDWVFTDQALPSDLIKRGMAIADASSPNGVRLVIEDYPYAMDGLEIWGAINTWVQDYVSLYYTSDDTVKGDLELQQWWKELVEVGHGDKKDEPWWPKMQTLQDLIQTCTTLIWTASALHASVNFGQYPYGGFILNRPTLSRRFMPEEGSPEYDELVTNPERAYLRTVTPKFQTLIDLSVIEILSRHASDEYYLGNRDSAEFWTSDVYALEAFKKFGNKLAEIEGILIQRNNDVSLRNRVGPVTMPYTLLYPTSEAGLTFRGIPNSISI* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0608 855 Gene3D - 165 264 - -
Amo19g0608 855 CDD PLAT_LH2 7 161 IPR042057 -
Amo19g0608 855 PRINTS Lipoxygenase signature 492 509 IPR013819 GO:0016702|GO:0046872
Amo19g0608 855 PRINTS Lipoxygenase signature 510 527 IPR013819 GO:0016702|GO:0046872
Amo19g0608 855 PRINTS Lipoxygenase signature 530 550 IPR013819 GO:0016702|GO:0046872
Amo19g0608 855 Gene3D - 265 353 IPR027433 -
Amo19g0608 855 SUPERFAMILY Lipoxigenase 165 855 IPR036226 -
Amo19g0608 855 ProSiteProfiles PLAT domain profile. 26 160 IPR001024 GO:0005515
Amo19g0608 855 PANTHER LIPOXYGENASE 5 855 IPR000907 GO:0016702|GO:0046872
Amo19g0608 855 Gene3D PLAT/LH2 domain 3 164 - -
Amo19g0608 855 ProSitePatterns Lipoxygenases iron-binding region signature 1. 510 524 IPR020833 GO:0016702|GO:0046872
Amo19g0608 855 ProSitePatterns Lipoxygenases iron-binding region signature 2. 537 547 IPR020834 GO:0016702|GO:0046872
Amo19g0608 855 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 163 855 IPR013819 GO:0016702|GO:0046872
Amo19g0608 855 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 164 IPR036392 GO:0005515
Amo19g0608 855 MobiDBLite consensus disorder prediction 222 252 - -
Amo19g0608 855 Pfam PLAT/LH2 domain 62 159 IPR001024 GO:0005515
Amo19g0608 855 Gene3D - 354 487 - -
Amo19g0608 855 PRINTS Plant lipoxygenase signature 130 148 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 156 177 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 195 211 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 228 247 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 295 316 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 340 356 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 379 398 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 445 469 IPR001246 GO:0016491
Amo19g0608 855 PRINTS Plant lipoxygenase signature 767 781 IPR001246 GO:0016491
Amo19g0608 855 SMART LH2_4 6 161 IPR001024 GO:0005515
Amo19g0608 855 Pfam Lipoxygenase 173 838 IPR013819 GO:0016702|GO:0046872
Amo19g0608 855 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 5 855 - -
Amo19g0608 855 Gene3D - 488 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0608 Amo-Chr19 9381504 9389369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0608 7 855 Acyl Lipid Metabolism Gene Families AT1G55020 58.769 0.0 1052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0608 K15718 - gmx:547869 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0608 19 9381504 9389369 Amo09g0565 09 7748119 7754663 PCT