Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0493 ATGGAATACCCAGACACCGCAATTTCTCTGAGATCGAGCTTAACGTTCGGTGAAACACTCTGTGCGGTGTGCATTCCGCTTATCGGAATCGTTGAAGCTCTGTTTGTCAGCTTAGCTGGTTGCTTCGATTTCCATGGCAACAAGCAAAGCAAGAAAAACCAGATCCCTAGCTCTTTTGATGACATCCTTCGCCTCGCCAAGGATTCTCCATTTACGGTTAATGAAATTGAGGCGCTGCGTGAGTTGTTCAAGAAGTTGAGTAGCTCAATTATTGATGATGGACTTATTCACAAGGAAGAGCTGCAATTGGCACTATTGAAGACCCCAGTTGGCGAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGAGGAATTTGTGCATGCTCTCAGTATCTTTCATCCATATGCTTCTTTAGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACCTGAGACAAACTGGATATATCGAGCGGGAAGAAGTTAGGCAAATGGTGGTTGCGATAATGTCTGAATGTGACATGCATTTGGAAGATGAAGTTCTTGAAAGCATTATTGATAAGACATTTCAAGATGCTGATACTGACAATGATGGTAAAATAAGCAAAGAAGAATGGAGGGAATATGTTCTTCGGCACCCGTCCCTATTGAAGCACATGACTCTTCCTTACCTCAAAGACGTAACCACGGTATTTACCAGCTTCATTTTCAACACGGAAGTTGATGATTCCCACTGGCAGAGAGGTATCATAAGCTATAAAAATTAA 801 0.407 MEYPDTAISLRSSLTFGETLCAVCIPLIGIVEALFVSLAGCFDFHGNKQSKKNQIPSSFDDILRLAKDSPFTVNEIEALRELFKKLSSSIIDDGLIHKEELQLALLKTPVGENLFLDRVFDLFDEKRNGVIEFEEFVHALSIFHPYASLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAIMSECDMHLEDEVLESIIDKTFQDADTDNDGKISKEEWREYVLRHPSLLKHMTLPYLKDVTTVFTSFIFNTEVDDSHWQRGIISYKN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0493 266 CDD EFh 152 219 IPR002048 GO:0005509
Amo19g0493 266 ProSiteProfiles EF-hand calcium-binding domain profile. 192 227 IPR002048 GO:0005509
Amo19g0493 266 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Amo19g0493 266 SMART efh_1 115 143 IPR002048 GO:0005509
Amo19g0493 266 SMART efh_1 196 224 IPR002048 GO:0005509
Amo19g0493 266 SMART efh_1 152 180 IPR002048 GO:0005509
Amo19g0493 266 Gene3D - 63 255 - -
Amo19g0493 266 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
Amo19g0493 266 SUPERFAMILY EF-hand 65 245 IPR011992 -
Amo19g0493 266 Pfam EF-hand domain pair 151 220 IPR002048 GO:0005509
Amo19g0493 266 PRINTS Recoverin family signature 119 140 - -
Amo19g0493 266 PRINTS Recoverin family signature 166 184 - -
Amo19g0493 266 PRINTS Recoverin family signature 212 232 - -
Amo19g0493 266 CDD EFh 116 177 IPR002048 GO:0005509
Amo19g0493 266 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 254 - -
Amo19g0493 266 Pfam EF-hand domain pair 93 137 IPR002048 GO:0005509
Amo19g0493 266 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Amo19g0493 266 PANTHER CALCINEURIN B 5 254 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0493 Amo-Chr19 7255880 7259748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0493 31 255 EF-hand Containing Proteins AT5G55990 60.000 3.06e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0493 K06268 - gmx:100801943 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0493 19 7255880 7259748 Amo09g0201 09 2150732 2153937 hybridization