Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0479 ATGGCATGCTTTGGAATCACAAGAGATGACTTCTCAGGAACATGTCTTGGAAATTTCAATTGGACTTCAATTTCCACTCAAGGGACTATAATAGACACAACCAACCTAATTTTTCTATGTATTTTCTATATATCTTTGCTCATAAATTTGATAATGAGAATCCCTAGTGGTAGCTCAAGAAAGGGGTGGCTTCATTTAGTTACTTCATTCTGTTGTGCTTTTTTGAGCATTACCTGTTTGGTTAATGGCTTCTGGAATCTCATAGCCAAATCTAATGGTTCCAATCAGCTGAGTTTGATTTACTTTATAAGATCACTGGTTTGGATTTCCTTAACTGTTTCTTTGCTTGTTCAGAAATCCCAATGGACTAAAATTTTAACCACTATTTGGTGGGTGTGTTCATGTGCATTGGTCTCAGCACTAAACATTGAAATTCTAGTTAGAGAGCAAAAGCTTGAGATTTATGATATGATGATATGGCCAGTACATATTCTACTTGTGATCTATGATTTCCATAACCATGGCTACTTTGTTCAACAACAAGTCTCAGATTCTAGTTTATCTGATCCTTTACTAGCTCATAAGGTTGAGCATAATCAAGAAACAGAATTAGGCCATGGCAACATTCTCAATAGAATGACATTCTCTTGGATCAATTTGTTACTGAAATTGGGTTACTCAAAGCCACTAACACTTGAAGACATCCCTTCCCTTGCTTCTGAAGATGAAGCTGAGATTGGTTATCAAAAGTTTGCTCATGAATTGGACTCCCTTTTGAGGGAGAGGAGCAAGAATGATTCTACAAACTTGGTTCTTTGGTCGATCGCGCGAGTTTACTTTAAAGAAAACATATTTATAGCCATTTGTGCGGTTCTCAGGACAATTTGTGCTGTAGCTTCTCCCTTACTTGTCTATTCCTTTGTGAAATACTCCAATTCCATTGAGCAAGACTTGAAATGGGGACTAACCATAGTGGCATGTCTAGTACTCGCCAAGGTGGTTGAGTCTATGTCTCAGAGGCATTGGTTTTTCAACTCAAGGAGGTCAGGGATGAAAATGAGATCAACTTTAATGGCAGCAGTATATCAGAAGCAGTTAAAGCTTTCTGTTTGGGGTAGGAGAAGGCATTCAACTGGTGAGATAGTGAATTATATTGCGGTTGATGCATATCGAATGGGAGAATTTCCATGGTGGTTTCATATAGCCTGGAGTTCTGCATTGCAAGTTTTTCTGGCTGTTTGTGTTCTTTTTGGTGTTGTTGGTCTTGGTGCACTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGAATCATCAATGTTCCATTTGCAAAGATCCTACAAAGATGTCGTTCTGAGTTTATGGTTGTACAGGATGAGCGTCTGAGATCAACTTCAGAGATTCTAAGTAGCATGAAAATCATAAAGTTACAATCATGGGAGGAAAAGTTCAAGAAACTAGTTGAATCGCTTCGCGCTAGAGAGTTCAAATGCTTGACTAAGGCACAGTTAATGAGAGCTTTTGGGGCATTCATTTATTGGATGTCTCCTACCATAATCTCTTCTGTTATCTTCATGGGGTGTGTTCTTTTCCAAAGTGCACCTTTGAATGCTGAAACCATCTTCACAATTCTTGCAGTATTGAAAAGCATGGGAGAACCTGTTAATCTGATTCCAGAGGCACTATCTGTTCTTATCCAAGTCAAAGTCTCCTTCGATCGCCTCAACGCATTTTTGCTGGATGATGAGATAAAAGTTGATGATGGTAGAAGAAATGCAACACTGAGTTCTTGTAACAGTGTTGAAATTATTGCAGGAAATTTCACCTGGAATGAGGAATCATTGCATCCAACTCTGAGAGATGTGAATCTAGATATAAAATGGGGTCAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAAACAGCTCTCTTATATGCAATTCTTGGAGAGATACCAAAAGTTTCAGGAACAGTTAGTGTGGGTGGAACTTTTGCATATGTTTCCCAAATTCCTTGGATCCAAAGTGGTACCATTCGCGATAATATCCTCTATGGAAAGCCTATGGAGAAAACCAGATATGAATATAGCATTAAGGTATGTGCCTTGGATAAGGATATTGATGGATTCAGCCATGGTGATCTCACAGAAATCGGTCAGCGGGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTCGCTCGAGCCGTCTATAGTGATGCAGATATCTATCTCCTTGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCCATTCTGTTCAATGATTGTGTGAAGACTGCTTTAAGAAGCAAAACTGTTATTCTAGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATCAAATTCTGGTGATGGAGAGAGGAGAAATAACTCAATCAGGAAGTTATAAAGATCTTTTGATTGCTGGAACAGCCTTTGAACAACTATTGAATGCTCACAGAGATGCAATCACAGGGATGAAGAAAAGGAATGAGAAGGAGAGAGTTCTTGAAAATATAGTTGCAGTTCATCAAGAGGATTCACATGGTTTGAATCTTGCAAACCGTGGAAGTGAAGCTGACATTTCCTCCAAAGTTCAACTTACACAAGAGGAAGAAAAGGAGATTGGTGATATTGGATGGAAGACATTCTGTGATTACATTTTATTCCCTAAGGGATCATGGCTTCTATGCTGTTGCATATTAGCACAATTCTCTTTTGTTGGTCTGCAAGCTGCATCAACTTTTTGGCTTGCACTAGCAATTGAGATACCAAAAGTAACAAGTAGCATATTGATTGGAGTTTATGCTGTGATTTCCTTTTTAAGTGTTGTATTTTCATATCTAAGGTCTTTCTTTGGTGCACGCCTTGGTTTGAAAGCTTCTAAGGCTTTCTTCTCTGCTTTCAATGATGCCATCTTTGGTGCTCCTATGTTGTTCTTTGACTCAACACCTGTAGGGAGGATTCTAACCAGAGCTTCATCAGATTTTAGTATTTTGGATTTCGATATGGCTTTCGCAACCTTCTTTGTAATAGGCGAGATAATTGAACTTTCAACAATGATTGGGATCATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCCATTCTTGCACTGGCGGCTTCAAAATATCTTCAGGGTTATTATCAAGTTTCTGCAAGGGAACTTATGAGAATCAATGGAACTACAAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGTGATTACTATAAGGGCTACCAAGATGATGGACAGATTTTTCAAAAGCTACCTAAAACTTGTTGACACAGATGCCACACTGTTCTTTCATTCTAATGCTGCCACAGAATGGTTAATTTTAAGGATTGAAGCCTTACAGAACTTGACACTCTTCACTGCAGCTTTGTTGCTTATTTTACTTCCAAAGGGATATGTGGCCCCTGGTCTTGTCGGAGTTTCGCTATCTTATGCATTTTCATTGACAGCCACCCAAGTTTTTCTGACCAAGTGCTTCTGCAACTTATCAAACTATTTGATCTCTCTTGAAAGAATCAAGCAATTTATTAACATACCATCCGAGCCTAGTGCAATTGTGGAGGACTTAAGGCCACCATCTTCTTGGCCGTCGAGGGGTCGGATTGATCTCCAATCTCTGGAGATTAGATATCGTCCAAATGCTCCATTAGTCCTTAAGGGCATATCTTGTACATTTAAAGAAGGGAGTAGAGTGGGAGTGGTAGGAAGAACTGGAAGTGGAAAAACTACACTTATAAGCGCTTTATTCCGCTTAGTTGAGCCTGCAGGAGGTGATATTCTTATAGATGGGATCAACATATGCTCAATAGGGCTGAAAGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAGCATTAGAACAAACTTGGACCCTTTAGGTCTCTACACTGATCATGAAATATGGAAGGCTCTAGAGAAATGTCAGCTTAAGGAAACAATTAGTTGTCTACCAAATCTCTTGGACTCTTCTGTGAGTGATGAAGGTGAAAACTGGAGTGTAGGGCAGCGCCAACTGTTTTGTCTAGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTGCTGGATGAAGCTACTGCCTCCATTGATTCCACCACCGACGCCATTTTACAACGAGTTATCAGAGAAGAATTCTCAGAATGCACAGTTATAACGGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTGATTGAATATGATGAGCCTTCAAAGCTTATGGAGAGAGCCTCTTCATTCTATAAGCTGGTGTCAGAATATTGGTCCAACTGTAATAGGAATATTCTCCAAAAAGACTAA 4386 0.3951 MACFGITRDDFSGTCLGNFNWTSISTQGTIIDTTNLIFLCIFYISLLINLIMRIPSGSSRKGWLHLVTSFCCAFLSITCLVNGFWNLIAKSNGSNQLSLIYFIRSLVWISLTVSLLVQKSQWTKILTTIWWVCSCALVSALNIEILVREQKLEIYDMMIWPVHILLVIYDFHNHGYFVQQQVSDSSLSDPLLAHKVEHNQETELGHGNILNRMTFSWINLLLKLGYSKPLTLEDIPSLASEDEAEIGYQKFAHELDSLLRERSKNDSTNLVLWSIARVYFKENIFIAICAVLRTICAVASPLLVYSFVKYSNSIEQDLKWGLTIVACLVLAKVVESMSQRHWFFNSRRSGMKMRSTLMAAVYQKQLKLSVWGRRRHSTGEIVNYIAVDAYRMGEFPWWFHIAWSSALQVFLAVCVLFGVVGLGALPGLVPLLICGIINVPFAKILQRCRSEFMVVQDERLRSTSEILSSMKIIKLQSWEEKFKKLVESLRAREFKCLTKAQLMRAFGAFIYWMSPTIISSVIFMGCVLFQSAPLNAETIFTILAVLKSMGEPVNLIPEALSVLIQVKVSFDRLNAFLLDDEIKVDDGRRNATLSSCNSVEIIAGNFTWNEESLHPTLRDVNLDIKWGQKIAVCGPVGAGKTALLYAILGEIPKVSGTVSVGGTFAYVSQIPWIQSGTIRDNILYGKPMEKTRYEYSIKVCALDKDIDGFSHGDLTEIGQRGINMSGGQKQRIQLARAVYSDADIYLLDDPFSAVDAHTASILFNDCVKTALRSKTVILVTHQVEFLSEVDQILVMERGEITQSGSYKDLLIAGTAFEQLLNAHRDAITGMKKRNEKERVLENIVAVHQEDSHGLNLANRGSEADISSKVQLTQEEEKEIGDIGWKTFCDYILFPKGSWLLCCCILAQFSFVGLQAASTFWLALAIEIPKVTSSILIGVYAVISFLSVVFSYLRSFFGARLGLKASKAFFSAFNDAIFGAPMLFFDSTPVGRILTRASSDFSILDFDMAFATFFVIGEIIELSTMIGIMVSVTWQVLIVAILALAASKYLQGYYQVSARELMRINGTTKAPLMNFTAETSLGVITIRATKMMDRFFKSYLKLVDTDATLFFHSNAATEWLILRIEALQNLTLFTAALLLILLPKGYVAPGLVGVSLSYAFSLTATQVFLTKCFCNLSNYLISLERIKQFINIPSEPSAIVEDLRPPSSWPSRGRIDLQSLEIRYRPNAPLVLKGISCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPAGGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYTDHEIWKALEKCQLKETISCLPNLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSTTDAILQRVIREEFSECTVITVAHRVPTVIDSDMVMVLSYGKLIEYDEPSKLMERASSFYKLVSEYWSNCNRNILQKD* 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0479 1461 SUPERFAMILY ABC transporter transmembrane region 898 1194 IPR036640 GO:0005524|GO:0016021
Amo19g0479 1461 Pfam ABC transporter 1231 1379 IPR003439 GO:0005524
Amo19g0479 1461 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 1450 - -
Amo19g0479 1461 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1177 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0479 1461 Gene3D - 1197 1448 IPR027417 -
Amo19g0479 1461 Gene3D - 575 847 IPR027417 -
Amo19g0479 1461 SUPERFAMILY ABC transporter transmembrane region 272 579 IPR036640 GO:0005524|GO:0016021
Amo19g0479 1461 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 822 IPR003439 GO:0005524
Amo19g0479 1461 CDD ABC_6TM_ABCC_D2 896 1189 IPR044726 GO:0140359
Amo19g0479 1461 CDD ABCC_MRP_domain1 599 799 - -
Amo19g0479 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1447 IPR027417 -
Amo19g0479 1461 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Amo19g0479 1461 SMART AAA_5 626 799 IPR003593 -
Amo19g0479 1461 SMART AAA_5 1240 1433 IPR003593 -
Amo19g0479 1461 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524
Amo19g0479 1461 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 63 1450 - -
Amo19g0479 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 821 IPR027417 -
Amo19g0479 1461 Pfam ABC transporter transmembrane region 284 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0479 1461 Pfam ABC transporter transmembrane region 931 1159 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g0479 1461 CDD ABC_6TM_ABCC_D1 285 573 IPR044746 GO:0140359
Amo19g0479 1461 Gene3D ABC transporter type 1, transmembrane domain 262 574 IPR036640 GO:0005524|GO:0016021
Amo19g0479 1461 CDD ABCC_MRP_domain2 1212 1432 - -
Amo19g0479 1461 Gene3D ABC transporter type 1, transmembrane domain 863 1195 IPR036640 GO:0005524|GO:0016021
Amo19g0479 1461 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1448 IPR003439 GO:0005524
Amo19g0479 1461 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 565 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0479 Amo-Chr19 6874201 6880005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0479 599 845 Calmodulin-binding Proteins AT2G36910 25.843 1.08e-20 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0479 - - gmx:100813711 2195.62