Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0427 ATGATTCCAGTTAGTGTAAAATGGCAAAAGGAGCTTTTCAAAGATGTAGAAATTGATACTACCCAGCCTCCTTATGTTTTTAAGTGCCAATTATATGATCTAACTGGGGTACCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTGTTAAAGGATGATGCTGATTGGTCAACATTAGGAGTGAAAGAGGGACAAAAGTTAATGATGATGGGTACAGCAGATGAAATTATTAAGTCTCCAGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGACATACTGCTGGCCTTTTCAATTTGGGAAATACCTGTTATATGAACTCAACATTACAATGTCTCCATTCTGTGCCAGAGTTGAAGTCAGCTTTGATTCAGTACTCACATTCAGGAAGGAACAATGATGTTGACCAGTCTTCTCATCTGTTGACAGTTGCTACCCGTGACTTATTCAATGAGCTTGATAAAAGTGTCAAGCCTGTGGCGCCAATGCAATTTTGGATGTTATTGAGGAAGAAGTACCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATATACACTTTCTCAGTCTCTAAGATCTAATGGATCCAGTGAAAATGCTGATGCTGTGAAGGCTCTTTTTGGCATAGAACTTATTAGCAGGATTCATTGCCAAGAGAGTAACGAAGAAAGCTCAGAAACAGAATCTGTTTATTCACTTAAATGCCACATATCTCAGGAGGTGAACCATTTGCATGAAGGAATAAAACAAGGATTAAAATCAGAAATTGGAGAAAAGCTTCCCTGCTTGCCGATATGTGTAATACTTAGGGAATCACGCATAATTTCATTTTGTCGTTTGATCTGGAAGAGAGAGTCAGAAAAAAAGGAAGATTTTGGCGGGTATAGCTCACTATCTTCTTACGCAGATATGGAAGTATATGATTTTTGTACGCCAGGTGCATTCTTTGCTTGCTCAGCCCGGCTTCTCACTATACCATTGTCCAAACATTCTTTACAAAACCAAAATTTATCGGATAGTCATGTTGAAGACTGGGTGTCCATGGATCGGATCCGATCTGCATATCCGCGGTGTTTATCCGAATCCGATCCGAAAATTGCGGATATGGATCCGATCCGCAAGGTTTTTCACACTTTACCAAATTCTCAATGCACATCAACGATCTCAGTCTCAGCAATTCTTCAACACACTGGTATGAAATGGACAAAATTTCTGATCAGCCAAAGAGATAACTCCCTGCATGACATTCTTTCAAGGTTGCCTTACGAAGATGCTGCAAGGACCAGTGTTTTAAAATTTGATTCTGAATGGAACTTTACATTTGAACATTTATTATATATTTTGACTTAA 1416 0.3912 MIPVSVKWQKELFKDVEIDTTQPPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTLGVKEGQKLMMMGTADEIIKSPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIQYSHSGRNNDVDQSSHLLTVATRDLFNELDKSVKPVAPMQFWMLLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSNGSSENADAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGIKQGLKSEIGEKLPCLPICVILRESRIISFCRLIWKRESEKKEDFGGYSSLSSYADMEVYDFCTPGAFFACSARLLTIPLSKHSLQNQNLSDSHVEDWVSMDRIRSAYPRCLSESDPKIADMDPIRKVFHTLPNSQCTSTISVSAILQHTGMKWTKFLISQRDNSLHDILSRLPYEDAARTSVLKFDSEWNFTFEHLLYILT* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0427 471 Pfam Ubiquitin carboxyl-terminal hydrolase 105 325 IPR001394 GO:0004843|GO:0016579
Amo19g0427 471 Gene3D Cysteine proteinases 98 305 - -
Amo19g0427 471 SUPERFAMILY Cysteine proteinases 102 284 IPR038765 -
Amo19g0427 471 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 314 IPR044635 GO:0004843|GO:0016579|GO:0043161
Amo19g0427 471 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 314 - -
Amo19g0427 471 Pfam Ubiquitin family 15 73 IPR000626 GO:0005515
Amo19g0427 471 Gene3D - 2 73 - -
Amo19g0427 471 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 471 IPR028889 -
Amo19g0427 471 CDD Ubl_USP14_like 1 75 - -
Amo19g0427 471 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Amo19g0427 471 SMART ubq_7 2 73 IPR000626 GO:0005515
Amo19g0427 471 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Amo19g0427 471 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
Amo19g0427 471 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0427 Amo-Chr19 5779916 5792170 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0427 K11843 - gmx:100787481 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0427 19 5779916 5792170 Amo09g0272 09 3147361 3155207 hybridization