Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0425 ATGACCGACTATACTCAAGAACAGGAGATGGAGATCGAAGCATTAGAAGCTATACTTATGGATGAATTCAAAGAAATACACTCCGGTGAAAGTGGCCTAAGTACTTCTAACCGCTGCTTCCAAATAACGGTCTCTGCCCAGGATGATGATACTGATGGATCATTTAACAATCCAGCTCAACTGGCTTTGATCTTCTCACATACAGAAAAGTATCCTGATGAACCTCCTCTTCTGAATGTGAAAAGTTTACAAGGAATAAATACTGAAGATTTAAAGAATTTGAAAGAGAAACTTATCCAAGAGGCATCTGAAAATCTGGGAATGGCTATGATCTACACTCTGGTTACCTCRGCTAAAGAGTGGTTGGCTGAGAAGTTTCAAGACACTGAAGCTGCAGAGGCTGAAGCAGAAGAGGCAGCCAAGGATGATGTAGTGGTACCCCATGGGGAACCAGTTACCCTTGAGACATTTTTGGCATGGAGAGAAAGGTTTGAAGCTGAACTGGCGCTGGAGCGAGCCAAGTTAATGCCGGAGTCTGCACTTACAGCTCCCAAGGAAAAGAAGCTCAGTGGTAGACAATGGTTTGAAAGTGGAAGAGCGAAAGGTGCAGCGGCTGTCAATGAGGAATCTGAAGAGGAGGATGAGGAAGATATTGATTTTGATGATGACGATTTTGAAGTTGATGAAGAGGATATGCTTGAACATTACCTGGCCGAAAAATCTGATTCATCCACACATTCCTCCAAGAGAGCTAGTTAA 759 0.4308 MTDYTQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQITVSAQDDDTDGSFNNPAQLALIFSHTEKYPDEPPLLNVKSLQGINTEDLKNLKEKLIQEASENLGMAMIYTLVTSAKEWLAEKFQDTEAAEAEAEEAAKDDVVVPHGEPVTLETFLAWRERFEAELALERAKLMPESALTAPKEKKLSGRQWFESGRAKGAAAVNEESEEEDEEDIDFDDDDFEVDEEDMLEHYLAEKSDSSTHSSKRAS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0425 252 MobiDBLite consensus disorder prediction 180 223 - -
Amo19g0425 252 Coils Coil 122 142 - -
Amo19g0425 252 Pfam RWD domain 6 122 IPR006575 GO:0005515
Amo19g0425 252 MobiDBLite consensus disorder prediction 208 223 - -
Amo19g0425 252 ProSiteProfiles RWD domain profile. 10 125 IPR006575 GO:0005515
Amo19g0425 252 PANTHER RWD DOMAIN-CONTAINING PROTEIN 1 243 IPR040213 -
Amo19g0425 252 SUPERFAMILY UBC-like 1 127 IPR016135 -
Amo19g0425 252 SMART RWD2001b 10 125 IPR006575 GO:0005515
Amo19g0425 252 Gene3D Ubiquitin Conjugating Enzyme 1 131 IPR016135 -
Amo19g0425 252 PANTHER BNAA05G15340D PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0425 Amo-Chr19 5720131 5724848 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0425 - - gmx:100788547 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0425 19 5720131 5724848 Amo19g0425 19 5720131 5724848 ECH
Amo19g0425 19 5720131 5724848 Amo09g0276 09 3209532 3214143 hybridization